| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014G17 | Sequence | 574 | 010840 (7) | gb|ABY19575.1| | 4e-107 | actin [Ipomoea batatas] | 762 | 000371 (8) | gb|ACJ05348.1| | 2e-91 | actin [Camellia sinensis] |
| JMFF017H02 | Sequence | 589 | 010840 (7) | gb|ABY19575.1| | 3e-110 | actin [Ipomoea batatas] | 602 | 000371 (8) | gb|AAW83504.1| | 3e-23 | actin [Ipomoea batatas] |
| JMFF051L07 | Sequence | 588 | 010840 (7) | gb|ABY19575.1| | 3e-112 | actin [Ipomoea batatas] | 490 | 000371 (8) | gb|AHA91825.1| | 7e-06 | actin-1, partial [Rosa hybrid cultivar] |
| JMFN044O20 | Sequence | 506 | 000371 (8) | gb|AHA91825.1| | 1e-06 | actin-1, partial [Rosa hybrid cultivar] | |||||
| JMFS049D07 | Sequence | 471 | 000371 (8) | gb|AHA91825.1| | 4e-31 | actin-1, partial [Rosa hybrid cultivar] | |||||
| JMFS105G03 | Sequence | 126 | 000371 (8) | gb|AHB60735.1| | 3e-10 | actin, partial [Vigna radiata] | |||||
| JMSF007N12 | Sequence | 268 | 010840 (7) | gb|AAK84834.1| | 1e-25 | actin [Elaeis oleifera] | 770 | 000371 (8) | gb|ACJ05348.1| | 2e-117 | actin [Camellia sinensis] |
| JMSF039O16 | Sequence | 661 | 010840 (7) | gb|ABY19575.1| | 1e-128 | actin [Ipomoea batatas] | 575 | 000371 (8) | gb|AHA91825.1| | 6e-22 | actin-1, partial [Rosa hybrid cultivar] |
This contig is upended
. : . : . : . : . : . :
rJMSF007N12+ TGAGCGGGAAATTGTTCGCGACATGAAGGAAAAGCTTGCATATGTGGC
____________________________________________________________
consensus TGAGCGGGAAATTGTTCGCGACATGAAGGAAAAGCTTGCATATGTGGC
. : . : . : . : . : . :
rJMSF007N12+ CCTTGACTACGAGCAAGAGCTTGAAACAGCAAGGAGCAGCTCCAATATTGAGAAGAACTA
rJMFF014G17+ GAGCAAGAGCTTGAAACAGCAAGGAGCAGCTNCAATATTGAGAAGAACTA
____________________________________________________________
consensus CCTTGACTACGAGCAAGAGCTTGAAACAGCAAGGAGCAGCTCCAATATTGAGAAGAACTA
. : . : . : . : . : . :
rJMSF007N12+ TGAGTTGCCTGATGGACAGGTAATTACAATTGGAGCTGAGAGATTCCGTTGCCCAGAGGT
JMFS105G03- ATTGGAGCTGAGAGATTCCGTTGCCCAGAAGT
rJMFF014G17+ TGAGTTGCCTGATGGACAGGTAATTACAATTGGAGCTGAGAGATTCCGTTGCCCAGAAGT
____________________________________________________________
consensus TGAGTTGCCTGATGGACAGGTAATTACAATTGGAGCTGAGAGATTCCGTTGCCCAGAAGT
. : . : . : . : . : . :
rJMSF007N12+ CCTATTCCAGCCATCTATGATTGGAATGGAAGCTGCGGGTATTCATGAGACTACCTACAA
JMFS105G03- CCTATTCCAGCCATCTATGATTGGAATGGAAGCTGC
rJMFF014G17+ CGTATTCCAGCCATCTATGATTGGAATGGAAGCTGCGGGTATTCATGAGACTACNTNCAA
____________________________________________________________
consensus CCTATTCCAGCCATCTATGATTGGAATGGAAGCTGCGGGTATTCATGAGACTACCTACAA
. : . : . : . : . : . :
rJMSF007N12+ CTCCATCATGAAGTGTGATGTAGATATTAGGAAGGACCTCTATGGTAACATTGTGCTCAG
rJMFF014G17+ CTCCATCATGAAGTGTGATGTAGATATTAGGAAGGACCTCTATGGTAACATNGTGCTCAG
____________________________________________________________
consensus CTCCATCATGAAGTGTGATGTAGATATTAGGAAGGACCTCTATGGTAACATTGTGCTCAG
. : . : . : . : . : . :
rJMSF007N12+ TGGTGGTTCTACCATGTTTCCTGGTATTGCCGATCGTATGAGCAAGGAAATCACTGCTCT
rJMFF014G17+ TGGTGGTTNTNCCATGTTTCCTGGTATTGCCGATNGTATGAGCAAGGAAATCANTGCTNT
rJMSF039O16+ GTTTCCTGGTATTGCCGATNGTATGAGCNAGGAAATCNCTGCTTT
rJMFF017H02+ CCTGGTATTGCCGATNGTATGAGCAAGGAAATCNCTGNTTT
____________________________________________________________
consensus TGGTGGTTCTACCATGTTTCCTGGTATTGCCGATCGTATGAGCAAGGAAATCACTGCTTT
. : . : . : . : . : . :
rJMSF007N12+ GGCACCCAGCAGCATGAAGATTAAGGTTGTCGCCCCACCAGAAAGGAAATACAGTGTTTG
JMFS049D07- CCCAGCAGCATGAAGATTAAGGTTGTCGCCCCACCAGAAAGGAAATACAGTGTTTG
rJMFF014G17+ GGCACCCAGCAGCATGAAGATTAAGGTTGTCGCCCCACCAGAAAGGAAATACAGTGTTTG
rJMSF039O16+ GGCCCCCNGCNGCNTGAAGNTTAAGGTTGTCNCCCCCCCNGAAAGGAAATACNGNGTTTG
rJMFF017H02+ GGCNCCCAGCAGCATGAAGATTAAGGTTGTNGCCCCCCCNGAAAGGAAATNCAGTGTTTG
____________________________________________________________
consensus GGCACCCAGCAGCATGAAGATTAAGGTTGTCGCCCCACCAGAAAGGAAATACAGTGTTTG
. : . : . : . : . : . :
rJMSF007N12+ GATTGGAGGATCTATCCTTGCATCCCTCAGCACTTTCCAACAGATGTGGATTTCAAAGAG
JMFS049D07- GATTGGAGGATCTATCCTTGCATCCCTCAGCACTTTCCAACAGATGTGGATTTCAAAGAG
rJMFF014G17+ GATTGGAGGATNTATCCTNGCATCCNTCAGCACTTTCCAACAGATGTGGATTTCAAAGAG
rJMSF039O16+ GATTGGNGGATCTATCCNTGCATCCCTCAGCNCTTTCCNACNGANGNGGATTTCAAAGAG
rJMFF017H02+ GATTGGAGGATTTATCCTTGCATCCCTCAGCNCTTTNCAACAGATGNGGATTTNAAAGAG
rJMFF051L07+ CAACAGATGTGGATTTCAAAGAG
JMFN044O20+ TTCCAACAGATGTGGATTTCAAAGAG
____________________________________________________________
consensus GATTGGAGGATCTATCCTTGCATCCCTCAGCACTTTCCAACAGATGTGGATTTCAAAGAG
. : . : . : . : . : . :
rJMSF007N12+ CGAGTACGAGGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGGCACAACTAC
JMFS049D07- CGAGTACGAGGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGGCACAACTAC
rJMFF014G17+ CGAGTACGAGGAGTNTGGTCCATCCATNGTCCNCAGGAAGTGCTTCTAAGGCACAACTAC
rJMSF039O16+ CGAGTACGAGGNGTNTGGTCCNTCCCTTGTCCCCNGGAAGNGCTTTTAAGGCNCAACTAC
rJMFF017H02+ NGAGTNCGAGGAGTTTGGTCCATCCNTTGTCCNCNGGAANTGNTTTTAAGGCNCAANTNC
rJMFF051L07+ CGAGTACGAGGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGGCACAACTAC
JMFN044O20+ CGAGTACGAGGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGGCACAACTAC
____________________________________________________________
consensus CGAGTACGAGGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGGCACAACTAC
. : . : . : . : . : . :
rJMSF007N12+ TTGGTGAGTGTCCTTTGTCTTTCCCACTCTTTTGGTATGACGTTCCAAATGATCCTAAAC
JMFS049D07- TTGGTGAGTGTCCTTTGTCTTTCCCACTCTTTTGGTATGACGTTCCAAATGATCCTAAAC
rJMFF014G17+ TTGGTGAGTGTCCTTTGTCTTTCCCACTCTTTTGGTATGACGTTCCAAATGATCNTAAAC
rJMSF039O16+ NTGGNGAGNGTCCNTTGTCTTTCCCCCTCTTTTGGTANGNCGTTCCNAANGATCCTAAAC
rJMFF017H02+ TTGGNGAGNGTCCTTTGTTTTTNCCNCTNTTTTGGTANGACGTTNCAAANGATCCTAAAC
rJMFF051L07+ TTGGTGAGTGTCCTTTGTCTTTCCCACTCTTTTGGTATGACGTTCCAAATGATCCTAAAC
JMFN044O20+ TTGGTGAGTGTCCTTTGTCTTTCCCACTCTTTTGGTATGACGTTCCAAATGATCCTAAAC
____________________________________________________________
consensus TTGGTGAGTGTCCTTTGTCTTTCCCACTCTTTTGGTATGACGTTCCAAATGATCCTAAAC
. : . : . : . : . : . :
rJMSF007N12+ TTTCACTGACAAGGAGAAGTTGTGAGGTCAGGTTTCAAGAGGAGGGCATATTTTATATCA
JMFS049D07- TTTCACTGACAAGGAGAAGTTGTGAGGTCAGGTTTCAAGAGGAGGGCATATTTTATATCA
rJMFF014G17+ TTTCACTGACAAGGAGAAGTTGTGAGGTCAGGTTTCAAGAGGAGGGCATATTTTATATCA
rJMSF039O16+ NTTCNCTGACNAGGNGAAGTTGTGAGGTCNGGTTTCNAGAGGNGGGCNTATTTTATATCA
rJMFF017H02+ TTTCNCTGACAAGGNGAANTTGTGAGGTCAGGTTTCAAGAGGNGGGCATATTTTATATCA
rJMFF051L07+ TTTCACTGACAAGGAGAAGTTGTGAGGTCAGGTTTCAAGAGGAGGGCATATTTTATATCA
JMFN044O20+ TTTCACTGACAAGGAGAAGTTGTGAGGTCAGGTTTCAAGAGGAGGGCATATTTTATATCA
____________________________________________________________
consensus TTTCACTGACAAGGAGAAGTTGTGAGGTCAGGTTTCAAGAGGAGGGCATATTTTATATCA
. : . : . : . : . : . :
rJMSF007N12+ ATTCGTTTGGTTCACATTGTTGTCATATTCAATGGATCCTAGCATCATTTGTGCTTCAAT
JMFS049D07- ATTCGTTTGGTTCACATTGTTGTCATATTCAATGGATCCTAGCATCATTTGTGCTTCAAT
rJMFF014G17+ ATTCGTTTGGTTCACATNGTTGTCATATTCAATGGATCNTAGCATCATNTGTGCTTCAAT
rJMSF039O16+ ATTCGTTTGGNTCNCNTTGNTGTCATATTCAANGGATCCNAGCNTCNTTTGTGCTTCAAN
rJMFF017H02+ ATTNGTTTGGTTCNCATTGTTGTCATATTCAANGGATCCTAGCATCATTTGNGNTTCAAT
rJMFF051L07+ ATTCGTTTGGTTCACATTGTTGTCATATTCAATGGATCCTAGCATCATTTGTGCTTCAAT
JMFN044O20+ ATTCGTTTGGTTCACATTGTTGTCATATTCAATGGATCCTAGCATCATTTGTGCTTCAAT
____________________________________________________________
consensus ATTCGTTTGGTTCACATTGTTGTCATATTCAATGGATCCTAGCATCATTTGTGCTTCAAT
. : . : . : . : . : . :
rJMSF007N12+ GTGTTGTTTCTTAGGTGTTTGTAGTTGGGGAGTGATTGTGAGGATTTCTTTCTTTTT
JMFS049D07- GTGTTGTTTCTTAGGTGTNTGTAGTTGGGGAGTGATTGNGAGGATTTCTTTCTTTTTTTG
rJMFF014G17+ GTGTTGTTTCTTAGGTGTTTGTAGTTGGGGAGTGATTGTGAGGATTTCTTTCTTTTTTTG
rJMSF039O16+ GNGTTGTTTNTTAGGNGTTTGTAGTTGGGGAGNGATTGTGAGGANTTCTTT-NTTTTTTG
rJMFF017H02+ -TGTTGTTTTTTAGGNGTTTGTANTTGGGGAGNGATTGNGAGGATTTTTTTTTTTTTTTG
rJMFF051L07+ GTGTTGTTTCTTAGGTGTTTGTAGTTGGGGAGTGATTGTGAGGATTTCTTTCTTTTTTTG
JMFN044O20+ GTGTTGTTTCTTAGGTGTTTGTAGTTGGGGAGTGATTGTGAGGATTTCTTTCTTTTTTTG
____________________________________________________________
consensus GTGTTGTTTCTTAGGTGTTTGTAGTTGGGGAGTGATTGTGAGGATTTCTTTCTTTTTTTG
. : . : . : . : . : . :
JMFS049D07- CTACCTAAAGTCTTACTATATTCTATGGCTATTGATTCTCGGA
rJMFF014G17+ CTTCCTAAAGTNTTACTATATTNTATGGCTTNTGATTCTCGGA
rJMSF039O16+ CTTCCTAAAGTTTTACTATATTCTATGGCNTTTGATTCTCGGNCNAGCNTATGTTAATAT
rJMFF017H02+ NTTCCTAAANTTTTACTATATTTTATGGNTTTTGATTTTNGGACAANCTTANGTTAATAT
rJMFF051L07+ CTTCCTAAAGTTTTACTATATTCTATGGCTTTTGATTCTCGGACAAGCTTATGTTAATAT
JMFN044O20+ CTTCCTAAAGTTTTACTATATTCTATGGCTTTTGATTCTCGGACAAGCTTATGTTAATAT
____________________________________________________________
consensus CTTCCTAAAGTTTTACTATATTCTATGGCTTTTGATTCTCGGACAAGCTTATGTTAATAT
. : . : . : . : . : . :
rJMSF039O16+ TTTATTGTAAGNGAAGAAAAAAAAAAACATTATGTTAG
rJMFF017H02+ TTTATTGTAAGAGAAGAAAAAAAAAAACATTATGTTAGTGTCAGTTTGCTGAAATTATAT
rJMFF051L07+ TTTATTGTAAGAGAAGAAAAAAAAAAACATTATGTTAGTGTCAGTTTGCCGAAATTATAT
JMFN044O20+ TTTATTGTAAGAGAAGAAAAAAAAAAACATTATGTTAGTGTCAGTTTGCTGAAATTATAT
____________________________________________________________
consensus TTTATTGTAAGAGAAGAAAAAAAAAAACATTATGTTAGTGTCAGTTTGCTGAAATTATAT
. : . : . : . : . : . :
rJMFF017H02+ ATGATCAGAT
rJMFF051L07+ ATGATCAGATTGAAGGTTTTCAAA
JMFN044O20+ ATGATCAGATTGAAGGTTTTCAAATTXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTCTC
____________________________________________________________
consensus ATGATCAGATTGAAGGTTTTCAAATTNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTCTC