Contig 000365:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013J01Sequence546000365 (4)ref|XP_010675511.1|4e-22PREDICTED: protein RALF-like 19 [Beta vulgaris subsp. vulgaris] ref|XP_010696047
JMFN029E03Sequence318000365 (4)
JMFN041P23Sequence620000365 (4)ref|XP_010675511.1|6e-21PREDICTED: protein RALF-like 19 [Beta vulgaris subsp. vulgaris] ref|XP_010696047
JMFN044N23Sequence548000365 (4)ref|XP_010675511.1|5e-21PREDICTED: protein RALF-like 19 [Beta vulgaris subsp. vulgaris] ref|XP_010696047

Alignment

This contig is upended


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JMFN013J01+                              GAAATAATCTCTTTTTTTAGTGGTTAATTGATTACTTAATT
JMFN044N23+                                                               ACTTAATT
JMFN041P23+                                                             TTACTTAATT
                      ____________________________________________________________
consensus                                GAAATAATCTCTTTTTTTAGTGGTTAATTGATTACTTAATT
 
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JMFN013J01+           AAGGAGTAATATAACGACTGAGAATTAGAGGAGGAGGAGGGAGAGGATAATGAAATATAT
JMFN044N23+           AAGGAGTAATATAACGACTGAGAATTAGAGGAGGAGGAGGGAGAGGATAATGAAATATAT
JMFN041P23+           AAGGAGTAATATAACGACTGAGAATTAGAGGAGGAGGAGGGAGAGGATAATGAAATATAT
                      ____________________________________________________________
consensus             AAGGAGTAATATAACGACTGAGAATTAGAGGAGGAGGAGGGAGAGGATAATGAAATATAT
 
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JMFN013J01+           CTGGAAATCTGGAATTGAATCGTCGCGGTGTTCTTCGTCTTCATCTTCATCTTCATCTTC
JMFN044N23+           CTGGAAATCTGGAATTGAATCGTCGCGGTGTTCTTCGTCTTCATCTTCATCTTCATCTTC
JMFN041P23+           CTGGAAATCTGGAATTGAATCGTCGCGGTGTTCTTCGTCTTCATCTTCATCTTCATCTTC
                      ____________________________________________________________
consensus             CTGGAAATCTGGAATTGAATCGTCGCGGTGTTCTTCGTCTTCATCTTCATCTTCATCTTC
 
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JMFN013J01+           AACCTCCTCTGGCGCAATGCGTGATCATGGAGCAGCCGCGGTTGTAGGGATTGACTTTCT
JMFN044N23+           AACCTCCTCTGGCGCAATGCGTGATCATGGAGCAGCCGCGGTTGTAGGGATTGACTTTCT
JMFN041P23+           AACCTCCTCTGGCGCAATGCGTGATCATGGAGCAGCCGCGGTTGTAGGGATTGACTTTCT
                      ____________________________________________________________
consensus             AACCTCCTCTGGCGCAATGCGTGATCATGGAGCAGCCGCGGTTGTAGGGATTGACTTTCT
 
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JMFN013J01+           GGTGCGTGTGGCAGTTGTAGTACGATCTGCCGCGCGCGTTGCAGGGGATGCTATTGGCGG
JMFN044N23+           GGTGCGTGTGGCAGTTGTAGTACGATCTGCCGCGCGCGTTGCAGGGGATGCTATTGGCGG
JMFN041P23+           GGTGCGTGTGGCAGTTGTAGTACGATCTGCCGCGCGCGTTGCAGGGGATGCTATTGGCGG
                      ____________________________________________________________
consensus             GGTGCGTGTGGCAGTTGTAGTACGATCTGCCGCGCGCGTTGCAGGGGATGCTATTGGCGG
 
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JMFN013J01+           CCAGCGCCGCGTAGCTGATGTACTTCGTCTGCCCTAGAACTCGCCGGCTCATCCCCAACT
JMFN044N23+           CCAGCGCCGCGTAGCTGATGTACTTCGTCTGCCCTAGAACTCGCCGGCTCATCCCCAACT
JMFN029E03+                                        TGCCCTAGAACTCGCCGGCTCATCCCCAACT
JMFN041P23+           CCAGCGCCGCGTAGCTGATGTACTTCGTCTGCCCTAGAACTCGCCGGCTCATCCCCAACT
                      ____________________________________________________________
consensus             CCAGCGCCGCGTAGCTGATGTACTTCGTCTGCCCTAGAACTCGCCGGCTCATCCCCAACT
 
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JMFN013J01+           CCATCGCCATCTCCTCGTCCTCGAACACGCAGTCGTCTCCGATCACGTTGCCGGTGCACT
JMFN044N23+           CCATCGCCATCTCCTCGTCCTCGAACACGCAGTCGTCTCCGATCACGTTGCCGGTGCACT
JMFN029E03+           CCATCGCCATCTCCTCGTCCTCGAACACGCAGTCGTCTCCGATCACGTTGCCGGTGCACT
JMFN041P23+           CCATCGCCATCTCCTCGTCCTCGAACACGCAGTCGTCTCCGATCACGTTGCCGGTGCACT
                      ____________________________________________________________
consensus             CCATCGCCATCTCCTCGTCCTCGAACACGCAGTCGTCTCCGATCACGTTGCCGGTGCACT
 
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JMFN013J01+           TCCTCGGCCGGGTAGGGGTGGCGTGGTTGCCGTGCACCATCAATAGCTGCGGCTGGTGGA
JMFN044N23+           TCCTCGGCCGGGTAGGGGTGGCGTGGTTGCCGTGCACCATCAATAGCTGCGGCTGGTGGA
JMFN029E03+           TCCTCGGCCGGGTAGGGGTGGCGTGGTTGCCGTGCACCATCAATAGCTGCGGCTGGTGGA
JMFN041P23+           TCCTCGGCCGGGTAGGGGTGGCGTGGTTGCCGTGCACCATCAATAGCTGCGGCTGGTGGA
                      ____________________________________________________________
consensus             TCCTCGGCCGGGTAGGGGTGGCGTGGTTGCCGTGCACCATCAATAGCTGCGGCTGGTGGA
 
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JMFN013J01+           AGCGGTGATTGTCATTGTAGGTCGGAGACGGTGGCGACGACTCTGCGACTCTAATGGATG
JMFN044N23+           AGCGGTGATTGTCATTGTAGGTCGGAGACGGTGGCGACGACTCTGCGACTCTAATGGATG
JMFN029E03+           AGCGGTGATTGTCATTGTAGGTCGGAGACGGTGGCGACGACTCTGCGACTCTAATGGATG
JMFN041P23+           AGCGGTGATTGTCATTGTAGGTCGGAGACGGTGGCGACGACTCTGCGACTCTAATGGATG
                      ____________________________________________________________
consensus             AGCGGTGATTGTCATTGTAGGTCGGAGACGGTGGCGACGACTCTGCGACTCTAATGGATG
 
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JMFN013J01+           TTACGACTGATAATGTCAGAACCAC                                   
JMFN044N23+           TTACGACTGATAATGTCAGAACCACGACGATTGACGATCGGAGATCCATTGCAGGTGATG
JMFN029E03+           TTACGACTGATAATGTCAGAACCACGACGATTGACGATCGGAGATCCATTGCAGGTGATG
JMFN041P23+           TTACGACTGATAATGTCAGAACCACGACGATTGACGATCGGAGATCCATTGCAGGTGATG
                      ____________________________________________________________
consensus             TTACGACTGATAATGTCAGAACCACGACGATTGACGATCGGAGATCCATTGCAGGTGATG
 
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JMFN029E03+           GGAATGGAGAGTGCAGAAATTCAAGTAGGGTTAGCTACAAGAGTTAG             
JMFN041P23+           GGAATGGAGAGTGCAGAAATTCAAGTAGGGTTAGCTACAAGAGTTAGTTATTTGACTTCA
                      ____________________________________________________________
consensus             GGAATGGAGAGTGCAGAAATTCAAGTAGGGTTAGCTACAAGAGTTAGTTATTTGACTTCA