Contig 000364:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN040M03Sequence464000364 (2)ref|XP_006397819.1|4e-06hypothetical protein EUTSA_v10001752mg, partial [Eutrema salsugineum] gb|ESQ3927
JMFN041L05Sequence464000364 (2)ref|XP_006397819.1|4e-06hypothetical protein EUTSA_v10001752mg, partial [Eutrema salsugineum] gb|ESQ3927

Alignment

This contig is upended


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JMFN041L05+                                   TTTAAAGAATAAACGGGGCAAAATGTTTATTATTAT
JMFN040M03+                           GTGAATTATTTAAAGAATAAACGGGGCAAAATGTTTATTATTAT
                      ____________________________________________________________
consensus                             GTGAATTATTTAAAGAATAAACGGGGCAAAATGTTTATTATTAT
 
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JMFN041L05+           TATAGTTTACAAAATTCGAAGAGTGAAGACAAAATTAGAGAATGCCACGAGGACAAAAAC
JMFN040M03+           TATAGTTTACAAAATTCGAAGAGTGAAGACAAAATTAGAGAATGCCACGAGGACAAAAAC
                      ____________________________________________________________
consensus             TATAGTTTACAAAATTCGAAGAGTGAAGACAAAATTAGAGAATGCCACGAGGACAAAAAC
 
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JMFN041L05+           GTGAATCTCTCTACTCTCTCAAACTCCAAAGGTCTGGTCAGGCTCAATGGCTCATACTTA
JMFN040M03+           GTGAATCTCTCTACTCTCTCAAACTCCAAAGGTCTGGTCAGGCTCAATGGCTCATACTTA
                      ____________________________________________________________
consensus             GTGAATCTCTCTACTCTCTCAAACTCCAAAGGTCTGGTCAGGCTCAATGGCTCATACTTA
 
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JMFN041L05+           ATGAATAATGTAGGTCAGCGCCAAAGCAAGCAGCATTAGAAGGTACGCTATCCCCTGATC
JMFN040M03+           ATGAATAATGTAGGTCAGCGCCAAAGCAAGCAGCATTAGAAGGTACGCTATCCCCTGATC
                      ____________________________________________________________
consensus             ATGAATAATGTAGGTCAGCGCCAAAGCAAGCAGCATTAGAAGGTACGCTATCCCCTGATC
 
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JMFN041L05+           AATGCTAGTTCCATCGCTGGTGGCCGTGGGAGAAGAGGGTGGAGCAGCCTGATCTGCGAC
JMFN040M03+           AATGCTAGTTCCATCGCTGGTGGCCGTGGGAGAAGAGGGTGGAGCAGCCTGATCTGCGAC
                      ____________________________________________________________
consensus             AATGCTAGTTCCATCGCTGGTGGCCGTGGGAGAAGAGGGTGGAGCAGCCTGATCTGCGAC
 
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JMFN041L05+           GGCCGGAAAACTGACGGCAGCCAGGACAAGAGTAAAGATGGCCACCGCCAACATTGAAGC
JMFN040M03+           GGCCGGAAAACTGACGGCAGCCAGGACAAGAGTAAAGATGGCCACCGCCAACATTGAAGC
                      ____________________________________________________________
consensus             GGCCGGAAAACTGACGGCAGCCAGGACAAGAGTAAAGATGGCCACCGCCAACATTGAAGC
 
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JMFN041L05+           CCTGCTCATCATTGCCATTTTGGTTAAACTCCACGGCGTCCTAAACCAGACGGGCGACGC
JMFN040M03+           CCTGCTCATCATTGCCATTTTGGTTAAACTCCACGGCGTCCTAAACCAGACGGGCGACGC
                      ____________________________________________________________
consensus             CCTGCTCATCATTGCCATTTTGGTTAAACTCCACGGCGTCCTAAACCAGACGGGCGACGC
 
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JMFN041L05+           GGAGTTTGAATGAGAGGAAAGAGTAGAAAACACAGACAATGGTATGATTATTAAGGATGT
JMFN040M03+           GGAGTTTGAATGAGAGGAAAGAGTAGAAAACACAGACAATGGTATGATTATTAAGGATGT
                      ____________________________________________________________
consensus             GGAGTTTGAATGAGAGGAAAGAGTAGAAAACACAGACAATGGTATGATTATTAAGGATGT