Contig 000361:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035G21Sequence584013212 (3)ref|XP_004235014.1|1e-13PREDICTED: polyadenylate-binding protein-interacting protein 11 [Solanum lycope650000361 (5)gb|KJB39555.1|5e-50hypothetical protein B456_007G019000 [Gossypium raimondii]
JMFF039I12Sequence583013212 (3)ref|XP_004235014.1|5e-19PREDICTED: polyadenylate-binding protein-interacting protein 11 [Solanum lycope671000361 (5)gb|KJB39555.1|1e-57hypothetical protein B456_007G019000 [Gossypium raimondii]
JMFN030C09Sequence609000361 (5)gb|KJB39555.1|5e-42hypothetical protein B456_007G019000 [Gossypium raimondii]
JMFN039F17Sequence518000361 (5)gb|AFW74337.1|7e-08hypothetical protein ZEAMMB73_453710 [Zea mays]
JMSF003I02Sequence346013212 (3)763000361 (5)ref|XP_011075899.1|1e-110PREDICTED: polyadenylate-binding protein-interacting protein 12 [Sesamum indicu

Alignment

This contig is upended


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rJMSF003I02+                                                   GATCATCAGGTCACTGAAG
                      ____________________________________________________________
consensus                                                      GATCATCAGGTCACTGAAG
 
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rJMSF003I02+          AGCAGCTTGCTGGACTCTTTCTCAACTGTGGCCAGGTTGTTGACTGTCGAATATGTGGTG
                      ____________________________________________________________
consensus             AGCAGCTTGCTGGACTCTTTCTCAACTGTGGCCAGGTTGTTGACTGTCGAATATGTGGTG
 
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rJMSF003I02+          ACCCCAACTCGGTGCTTCGCTTTGCTTTTGTTGAATTTACTGATGAAGAAGGAGCAAGGA
                      ____________________________________________________________
consensus             ACCCCAACTCGGTGCTTCGCTTTGCTTTTGTTGAATTTACTGATGAAGAAGGAGCAAGGA
 
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rJMSF003I02+          ATGCTTTGAGTCTAGCAGGAACTATGCTTGGGTACTATCCAGTGAGGGTGCTTCCCTCTA
                      ____________________________________________________________
consensus             ATGCTTTGAGTCTAGCAGGAACTATGCTTGGGTACTATCCAGTGAGGGTGCTTCCCTCTA
 
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rJMSF003I02+          AAACTGCTATTGCACCCGTTAATCCAACATTTCTGCCACAGTCTGAAGATGAAAGGGAGA
rJMFF039I12+                                 CCAACATTTCTGCCACAGTCTGAAGATGAAAGGGAGA
rJMFF035G21+                                                  GTCTGAAGATGAAAGGGAGA
                      ____________________________________________________________
consensus             AAACTGCTATTGCACCCGTTAATCCAACATTTCTGCCACAGTCTGAAGATGAAAGGGAGA
 
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rJMSF003I02+          TGTGTGCAAGAACTATATATTGTACAAACATTGATAAGAAGGTTACTCAAGCAGATGTCA
rJMFF039I12+          TGTGTGCAAGAACTATATATTGTACAAACATTGATAAGAAGGTTACTCAAGCAGATGTCA
JMFN030C09-                        TATATATTGTACAAACATTGATAAGAAGGTTACTCAAGCAGATGTCA
rJMFF035G21+          TGTGTGCAAGAACTATATATTGTACAAACATTGATAAGAAGGTTACTCAAGCAGATGTCA
                      ____________________________________________________________
consensus             TGTGTGCAAGAACTATATATTGTACAAACATTGATAAGAAGGTTACTCAAGCAGATGTCA
 
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rJMSF003I02+          AACTCTTTTTTGAAACCATTTGTGGAGAGGTTCACCGTTTGCGGTTGCTTGGTGACTATC
rJMFF039I12+          AACTCTTTTTTGAAACCATTTGTGGAGAGGTTCACCGTTTGCGGTTGCTTGGTGACTATC
JMFN030C09-           AACTCTTTTTTGAAACCATTTGTGGAGAGGTTCACCGTTTGCGGTTGCTTGGTGACTATC
rJMFF035G21+          AACTCTTTTTTGAAACCATTTGTGGAGAGGTTCACCGTTTGCGGTTGCTTGGTGACTATC
                      ____________________________________________________________
consensus             AACTCTTTTTTGAAACCATTTGTGGAGAGGTTCACCGTTTGCGGTTGCTTGGTGACTATC
 
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rJMSF003I02+          AGCATTCAACACGCATAGCATTTGTTGAGTTTGTAATGGCTGAGAGTGCGATTGCTGCAT
rJMFF039I12+          AGCATTCAACACGCATAGCATTTGTTGAGTTTGTAATGGCTGAGAGTGCGATTGCTGCAT
JMFN030C09-           AGCATTCAACACGCATAGCATTTGTTGAGTTTGTAATGGCTGAGAGTGCGATTGCTGCAT
rJMFF035G21+          AGCATTCAACACGCATAGCATTTGTTGAGTTTGTAATGGCTGAGAGTGCGATTGCTGCAT
JMFN039F17-                                                GGCTGAGAGTGCGATTGCTGCAT
                      ____________________________________________________________
consensus             AGCATTCAACACGCATAGCATTTGTTGAGTTTGTAATGGCTGAGAGTGCGATTGCTGCAT
 
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rJMSF003I02+          TGAACTGCAGTGGTGTTATCTTGGGATCACTTCCGATAAGGGTAAGTCCATCAAAGACTC
rJMFF039I12+          TGAACTGCAGTGGTGTTATCTTGGGATCACTTCCGATAAGGGTAAGTCCATCAAAGACTC
JMFN030C09-           TGAACTGCAGTGGTGTTATCTTGGGATCACTTCCGATAAGGGTAAGTCCATCAAAGACTC
rJMFF035G21+          TGAACTGCAGTGGTGTTATCTTGGGATCACTTCCGATAAGGGTAAGTCCATCAAAGACTC
JMFN039F17-           TGAACTGCAGTGGTGTTATCTTGGGATCACTTCCGATAAGGGTAAGTCCATCAAAGACTC
                      ____________________________________________________________
consensus             TGAACTGCAGTGGTGTTATCTTGGGATCACTTCCGATAAGGGTAAGTCCATCAAAGACTC
 
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rJMSF003I02+          CTGTTCGACCCCGTGCTCCACGCCCTGCTGTGCTGCACTGATCTATCCTGTGCCACCGCC
rJMFF039I12+          CTGTTCGACCCCGTGCTCCACGCCCTGCTGTGCTGCACTGATCTATCCTGTGCCACCGCC
JMFN030C09-           CTGTTCGACCCCGTGCTCCACGCCCTGCTGTGCTGCACTGATCTATCCTGTGCCACCGCC
rJMFF035G21+          CTGTTCGACCCCGTGCTCCACGCCCTGCTGTGCTGCACTGATCTATCCTGTGCCACCGCC
JMFN039F17-           CTGTTCGACCCCGTGCTCCACGCCCTGCTGTGCTGCACTGATCTATCCTGTGCCACCGCC
                      ____________________________________________________________
consensus             CTGTTCGACCCCGTGCTCCACGCCCTGCTGTGCTGCACTGATCTATCCTGTGCCACCGCC
 
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rJMSF003I02+          TTAAAGCTGTTCTTGTTCGTATTCTATTCTATACATATAGATGATACAGATACCTCCTCC
rJMFF039I12+          TTAAAGCTGTTCTTGTTCGTATTCTATTCTATACATATAGATGATACAGATACCTCCTCC
JMFN030C09-           TTAAAGCTGTTCTTGTTCGTATTCTATTCTATACATATAGATGATACAGATACCTCCTCC
rJMFF035G21+          TTAAAGCTGTTCTTGTTCGTATTCTATTCTATACATATAGATGATACAGATACCTCCTCC
JMFN039F17-           TTAAAGCTGTTCTTGTTCGTATTCTATTCTATACATATAGATGATACAGATACCTCCTCC
                      ____________________________________________________________
consensus             TTAAAGCTGTTCTTGTTCGTATTCTATTCTATACATATAGATGATACAGATACCTCCTCC
 
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rJMSF003I02+          ATAGCGCTGTGCTTAGCCGAATCTATGAATTAGGGTTTTGGTGTTGTCGGACCCGTCATG
rJMFF039I12+          ATAGCGCTGTGCTTAGCCGAATCTATGAATTAGGGTTTTGGTGTTGTCGGACCCGTCATG
JMFN030C09-           ATAGCGCTGTGCTTAGCCGAATCTATGAATTAGGGTTTTGGTGTTGTCGGACCCGTCATG
rJMFF035G21+          ATAGCGCTGTGCTTAGCCGAATCTATGAATTAGGGTTTTGGTGTTGTCGGACCCGTCATG
JMFN039F17-           ATAGCGCTGTGCTTAGCCGAATCTATGAATTAGGGTTTTGGTGTTGTCGGACCCGTCATG
                      ____________________________________________________________
consensus             ATAGCGCTGTGCTTAGCCGAATCTATGAATTAGGGTTTTGGTGTTGTCGGACCCGTCATG
 
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rJMSF003I02+          GTTTGGTATCTGCAACCAACGTTTTCTTTTGTAGCTGTGTTAGATGTGCAACCAACGTTT
rJMFF039I12+          GTTTGGTATCTGCAACCAACGTTTTCTTTTGTAGCTGTGTTAGATGTGCAACCAACGTTT
JMFN030C09-           GTTTGGTATCTGCAACCAACGTTTTCTTTTGTAGCTGTGTTAGATGTGCAACCAACGTTT
rJMFF035G21+          GTTTGGTATCTGCAACCAACGTTTTCTTTTGTAGCTGTGTTAGATGTGCAACCAACGTTT
JMFN039F17-           GTTTGGTATCTGCAACCAACGTTTTCTTTTGTAGCTGTGTTAGATGTGCAACCAACGTTT
                      ____________________________________________________________
consensus             GTTTGGTATCTGCAACCAACGTTTTCTTTTGTAGCTGTGTTAGATGTGCAACCAACGTTT
 
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rJMSF003I02+          TCTTTTGTAGC                                                 
rJMFF039I12+          TCTTTTGTAGCTGTGTTAGATGTTGTAGAGAGTTGGATGGTGTATTACGAGAGGCGTAAT
JMFN030C09-           TCTTTTGTAGCTGTGTTAGATGTTGTAGAGAGTTGGATGGTGTATTACGAGAGGCGTAAT
rJMFF035G21+          TCTTTTGTAGCTGTGTTAGATGTTGTAGAGAGTTGGATGGTGTATTACGAGAGGCGTAAT
JMFN039F17-           TCTTTTGTAGCTGTGTTAGATGTTGTAGAGAGTTGGATGGTGTATTACGAGAGGCGTAAT
                      ____________________________________________________________
consensus             TCTTTTGTAGCTGTGTTAGATGTTGTAGAGAGTTGGATGGTGTATTACGAGAGGCGTAAT
 
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rJMFF039I12+          TTGTGGTAATTTATGCTGCCTGCCAAGTATGTTCAATTCTGTAGGCTGTGCCTCAAAACT
JMFN030C09-           T--TGGTAATTTATGCTGCCTGCCAAGTATGTTCAATTCTGTANGCTGTGCCTNCAAACT
rJMFF035G21+          TTGTGGTAATTTATGCTGCCTGCCAAGTATGTTCAATTCTGTAGGCTGTGCCTCAAAACT
JMFN039F17-           TTGTGGTAATTTATGCTGCCTGCCAAGTATGTTCAATTCTGTAGGCTGTGCCTCAAAACT
                      ____________________________________________________________
consensus             TTGTGGTAATTTATGCTGCCTGCCAAGTATGTTCAATTCTGTAGGCTGTGCCTCAAAACT
 
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rJMFF039I12+          AATACTCGTACCATTTCATCAT                                      
JMFN030C09-           AATACTCGTACCATTTCATCAT                                      
rJMFF035G21+          AATACTCGTACCATTTCATCATGT                                    
JMFN039F17-           AATACTCGTACCATTTCATCATGTTTCTATTGTTTATACATTGCTTAAGTCTTCTTCCCT
                      ____________________________________________________________
consensus             AATACTCGTACCATTTCATCATGTTTCTATTGTTTATACATTGCTTAAGTCTTCTTCCCT