Contig 000355:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023F20Sequence487001676 (3)ref|XP_009629843.1|6e-19PREDICTED: U-box domain-containing protein 33 isoform X2 [Nicotiana tomentosifo774000355 (3)ref|XP_009629845.1|8e-116PREDICTED: U-box domain-containing protein 33 isoform X4 [Nicotiana tomentosifo
JMFN034A17Sequence621000355 (3)ref|XP_009629845.1|1e-124PREDICTED: U-box domain-containing protein 33 isoform X4 [Nicotiana tomentosifo
JMFS074C01Sequence627000355 (3)ref|XP_009629845.1|5e-108PREDICTED: U-box domain-containing protein 33 isoform X4 [Nicotiana tomentosifo

Alignment

This contig is upended


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rJMFF023F20-                                                                    AA
                      ____________________________________________________________
consensus                                                                       AA
 
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rJMFF023F20-          TCTTTAAAGAAACAAAAAATTACAACACACAAAATTGTCTTCCAGCTGCTGTGATGTAAG
                      ____________________________________________________________
consensus             TCTTTAAAGAAACAAAAAATTACAACACACAAAATTGTCTTCCAGCTGCTGTGATGTAAG
 
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rJMFF023F20-          TAGAATGTAGTTTGGTAATGTGATCTATACAAGGCACATCAGAAGAGTCTTAGGATGCAA
                      ____________________________________________________________
consensus             TAGAATGTAGTTTGGTAATGTGATCTATACAAGGCACATCAGAAGAGTCTTAGGATGCAA
 
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JMFS074C01+            AACAGATACCACTGAGAAAGCAAAAGAAAAGGGATTTTCATAGACTTGAAGAATGCAAG
rJMFF023F20-          AAACAGATACCACTGAGAAAGCAAAAGAAAAGGGATTTTCATAGACTTGAAGAATGCAAG
                      ____________________________________________________________
consensus             AAACAGATACCACTGAGAAAGCAAAAGAAAAGGGATTTTCATAGACTTGAAGAATGCAAG
 
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JMFS074C01+           GAGCAGTATCAATGCTGCTGCAGCCACTCCTGTATAGCAGAACGAAGAGCGCGATTTGCC
rJMFF023F20-          GAGCAGTATCAATGCTGCTGCAGCCACTCCTGTATAGCAGAACGAAGAGCGCGATTTGCC
                      ____________________________________________________________
consensus             GAGCAGTATCAATGCTGCTGCAGCCACTCCTGTATAGCAGAACGAAGAGCGCGATTTGCC
 
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JMFS074C01+           ACGAGATTGGTGTGGGAAAGCTGGAGATTTGTCATGGGTGATGTGTCATGACCACTGTCC
rJMFF023F20-          ACGAGATTGGTGTGGGAAAGCTGGAGATTTGTCATGGGTGATGTGTCATGACCACTGTCC
JMFN034A17+                                                  GATGTGTCATGACCACTGTCC
                      ____________________________________________________________
consensus             ACGAGATTGGTGTGGGAAAGCTGGAGATTTGTCATGGGTGATGTGTCATGACCACTGTCC
 
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JMFS074C01+           AACCATCCTCTTAGAGCTTCGGCCTCGTAAGTGAAACCATCAGCTGCAACTACAGGGTCT
rJMFF023F20-          AACCATCCTCTTAGAGCTTCGGCCTCGTAAGTGAAACCATCAGCTGCAACTACAGGGTCT
JMFN034A17+           AACCATCCTCTTAGAGCTTCGGCCTCGTAAGTGAAACCATCAGCTGCAACTACAGGGTCT
                      ____________________________________________________________
consensus             AACCATCCTCTTAGAGCTTCGGCCTCGTAAGTGAAACCATCAGCTGCAACTACAGGGTCT
 
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JMFS074C01+           TCCATGATTTCCTGAAAGATGGGACATATAAAATAGTGAGGGATTTGGCAACGCTCTTCG
rJMFF023F20-          TCCATGATTTCCTGAAAGATGGGACATATAAAATAGTGAGGGATTTGGCAACGCTCTTCG
JMFN034A17+           TCCATGATTTCCTGAAAGATGGGACATATAAAATAGTGAGGGATTTGGCAACGCTCTTCG
                      ____________________________________________________________
consensus             TCCATGATTTCCTGAAAGATGGGACATATAAAATAGTGAGGGATTTGGCAACGCTCTTCG
 
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JMFS074C01+           GAACTTAGTTGAAACGATGAGGCACCACATGAAGCTCTCATTGGTTCAAGCACCTTCCAC
rJMFF023F20-          GAACTTAGTTGAAACGATGAGGCACCACATGAAGCTCTCATTGGTTCAAGCACCTTCCAC
JMFN034A17+           GAACTTAGTTGAAACGATGAGGCACCACATGAAGCTCTCATTGGTTCAAGCACCTTCCAC
                      ____________________________________________________________
consensus             GAACTTAGTTGAAACGATGAGGCACCACATGAAGCTCTCATTGGTTCAAGCACCTTCCAC
 
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JMFS074C01+           ACCTCTGAAGCAAGGTCTGGTCTCTGCCTGCGATTCATCTCACAGCAACTCATTGCCAGG
rJMFF023F20-          ACCTCTGAAGCAAGGTCTGGTCTCTGCCTGCGATTCATCTCACAGCAACTCATTGCCAGG
JMFN034A17+           ACCTCTGAAGCAAGGTCTGGTCTCTGCCTGCGATTCATCTCACAGCAACTCATTGCCAGG
                      ____________________________________________________________
consensus             ACCTCTGAAGCAAGGTCTGGTCTCTGCCTGCGATTCATCTCACAGCAACTCATTGCCAGG
 
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JMFS074C01+           TGAGCCAGCTGTTTAGCTTGCACAAATGGCCAGTCCCCGGCAGTTGGATCCAGAAGATCT
rJMFF023F20-          TGAGCCAGCTGTTTAGCTTGCACAAATGGCCAGTCCCCGGCAGTTGGATCCAGAAGATCT
JMFN034A17+           TGAGCCAGCTGTTTAGCTTGCACAAATGGCCAGTCCCCGGCAGTTGGATCCAGAAGATCT
                      ____________________________________________________________
consensus             TGAGCCAGCTGTTTAGCTTGCACAAATGGCCAGTCCCCGGCAGTTGGATCCAGAAGATCT
 
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JMFS074C01+           TTTAGATTTCCTTTATCCAAGGCATTTTGAACTTCCCTTGTAATTCCTAATGCAGACTTT
rJMFF023F20-          TTTAGATTTCCTTTATCCAAGGCATTTTGAACTTCCCTTGTAATTCCTAATGCAGACTTT
JMFN034A17+           TTTAGATTTCCTTTATCCAAGGCATTTTGAACTTCCCTTGTAATTCCTAATGCAGACTTT
                      ____________________________________________________________
consensus             TTTAGATTTCCTTTATCCAAGGCATTTTGAACTTCCCTTGTAATTCCTAATGCAGACTTT
 
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JMFS074C01+           CCAGTTAGCAACCTCAATAGTATGATTCCAAACGAATAGACATCAGACTTTGGAGTAAGC
rJMFF023F20-          CCAGTTAGCAACCTCAATAGTATGATTCCAAACGAATAGACATCAGACTTTGGAGTAAGC
JMFN034A17+           CCAGTTAGCAACCTCAATAGTATGATTCCAAACGAATAGACATCAGACTTTGGAGTAAGC
                      ____________________________________________________________
consensus             CCAGTTAGCAACCTCAATAGTATGATTCCAAACGAATAGACATCAGACTTTGGAGTAAGC
 
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JMFS074C01+           TCTCCTGT                                                    
rJMFF023F20-          TCTCCTGTTGAAAGGAACTCAGGATCCATATATACNAAAGTGCCTTTCGGAT        
JMFN034A17+           TCTCCTGTTGAAAGGAACTCAGGATCCATATATACAAAAGTGCCTTTCGGATCAGTTCTC
                      ____________________________________________________________
consensus             TCTCCTGTTGAAAGGAACTCAGGATCCATATATACAAAAGTGCCTTTCGGATCAGTTCTC
 
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JMFN034A17+           CAACAGAGTGAAGTATCATTATCTGACAATTCATTTTGAGAGAGAACACGGCAAATTCCA
                      ____________________________________________________________
consensus             CAACAGAGTGAAGTATCATTATCTGACAATTCATTTTGAGAGAGAACACGGCAAATTCCA
 
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JMFN034A17+           AAGTCACTGAGCTTACTCACAAAGTTCAAATCCAGCAAAATATTTGCTGGCTTTAGGTCA
                      ____________________________________________________________
consensus             AAGTCACTGAGCTTACTCACAAAGTTCAAATCCAGCAAAATATTTGCTGGCTTTAGGTCA