Contig 000353:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038K21Sequence579000353 (4)dbj|BAJ13304.1|3e-85autophagy 8 [Ipomoea nil]544000353 (4)dbj|BAJ13304.1|2e-85autophagy 8 [Ipomoea nil]
JMFN001E10Sequence561000353 (4)dbj|BAJ13304.1|4e-85autophagy 8 [Ipomoea nil]
JMFN033H12Sequence567000353 (4)dbj|BAJ13304.1|3e-85autophagy 8 [Ipomoea nil]

Alignment

This contig is upended


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JMFN001E10+                                            GTTAAGTATTATTATTTCAAATATATA
JMFF038K21+                           TTTTTTTTTTGGCACAAGTTAAGTATTATTATTTCAAATATATA
rJMFF038K21-                                                              AATATATA
JMFN033H12+                                            GTTAAGTATTATTATTTCAAATATATA
                      ____________________________________________________________
consensus                             TTTTTTTTTTGGCACAAGTTAAGTATTATTATTTCAAATATATA
 
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JMFN001E10+           TATAAACCTTGCACACGACTTTAAAGAATGTACATAATGCCAATGAGGTCACCACAGTTC
JMFF038K21+           TATAAACCTTGCACACGACTTTAAAGAATGTACATAATGCCAATGAGGTCACCACAGTTC
rJMFF038K21-          TATAAACCTTGCACACGACTTTAAAGAATGTACATAATGCCAATGAGGTCACCACAGTTC
JMFN033H12+           TATAAACCTTGCACACGGCTTTAAAGAATGTACATAATGCCAATGAGGTCACCACAGTTC
                      ____________________________________________________________
consensus             TATAAACCTTGCACACGACTTTAAAGAATGTACATAATGCCAATGAGGTCACCACAGTTC
 
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JMFN001E10+           ACTTAAAACAAACATGTCAATAGAGTTATATGTAAAACGTGAGTGACCCAACTTAATTGA
JMFF038K21+           ACTTAAAACAAACATGTCAATAGAGTTATATGTAAAACGTGAGTGACCCAACTTAATTGA
rJMFF038K21-          ACTTAAAACAAACATGTCAATAGAGTTATATGTAAAACGTGAGTGACCCAACTTAATTGA
JMFN033H12+           ACTTAAAACAAACATGTCAATAGAGTTATATGTAAAACGTGAGTGACCCAACTTAATTGA
                      ____________________________________________________________
consensus             ACTTAAAACAAACATGTCAATAGAGTTATATGTAAAACGTGAGTGACCCAACTTAATTGA
 
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JMFN001E10+           GAGCTATAGCACCAAAGGTTTTCTCGCTGCTGTAGCACATGTACAAGAACCCATCTTCAT
JMFF038K21+           GAGCTATAGCACCAAAGGTTTTCTCGCTGCTGTAGCACATGTACAAGAACCCATCTTCAT
rJMFF038K21-          GAGCTATAGCACCAAAGGTTTTCTCGCTGCTGTAGCACATGTACAAGAACCCATCTTCAT
JMFN033H12+           GAGCTATAGCACCAAAGGTTTTCTCGCTGCTGTAGCACATGTACAAGAACCCATCTTCAT
                      ____________________________________________________________
consensus             GAGCTATAGCACCAAAGGTTTTCTCGCTGCTGTAGCACATGTACAAGAACCCATCTTCAT
 
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JMFN001E10+           CCTTAAATGATTCGTACACAGAATCCATCACCGCCGATGTTTGAGGCAAGGTGTTCTCCA
JMFF038K21+           CCTTAAATGATTCGTACACAGAATCCATCACCGCCGATGTTTGAGGCAAGGTGTTCTCCA
rJMFF038K21-          CCTTAAATGATTCGTACACAGAATCCATCACCGCCGATGTTTGAGGCAAGGTGTTCTCCA
JMFN033H12+           CCTTAAATGATTCGTACACAGAATCCATCACCGCCGATGTTTGAGGCAAGGTGTTCTCCA
                      ____________________________________________________________
consensus             CCTTAAATGATTCGTACACAGAATCCATCACCGCCGATGTTTGAGGCAAGGTGTTCTCCA
 
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JMFN001E10+           CAAATACAAACAGAGCCTTCCCGGGAGCCAGATGAAGGCGACCACTCAAGATGTGGATAA
JMFF038K21+           CAAATACAAACAGAGCCTTCCCGGGAGCCAGATGAAGGCGACCACTCAAGATGTGGATAA
rJMFF038K21-          CAAATACAAACAGAGCCTTCCCGGGAGCCAGATGAAGGCGACCACTCAAGATGTGGATAA
JMFN033H12+           CAAATACAAACAGAGCCTTCCCGGGAGCCAGATGAAGGCGACCACTCAAGATGTGGATAA
                      ____________________________________________________________
consensus             CAAATACAAACAGAGCCTTCCCGGGAGCCAGATGAAGGCGACCACTCAAGATGTGGATAA
 
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JMFN001E10+           ACTGCCCGATAGACATGTCTCGGGGTACAAGGTATTTCTTCTTCTCCATCTCGGAGAGAT
JMFF038K21+           ACTGCCCGATAGACATGTCTCGGGGTACAAGGTATTTCTTCTTCTCCATCTCGGAGAGAT
rJMFF038K21-          ACTGCCCGATAGACATGTCTCGGGGTACAAGGTATTTCTTCTTCTCCATCTCGGAGAGAT
JMFN033H12+           ACTGCCCGATAGACATGTCTCGGGGTACAAGGTATTTCTTCTTCTCCATCTCGGAGAGAT
                      ____________________________________________________________
consensus             ACTGCCCGATAGACATGTCTCGGGGTACAAGGTATTTCTTCTTCTCCATCTCGGAGAGAT
 
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JMFN001E10+           CGGTTTTTGAATATCTTTCAACCACAACAGGCAAACGATCGGGATATTTAGCAATCATAT
JMFF038K21+           CGGTTTTTGAATATCTTTCAACCACAACAGGCAAACGATCGGGATATTTAGCAATCATAT
rJMFF038K21-          CGGTTTTTGAATATCTTTCAACCACAACAGGCAAACGATCGGGATATTTAGCAATCATAT
JMFN033H12+           CGGTTTTTGAATATCTTTCAACCACAACAGGCAAACGATCGGGATATTTAGCAATCATAT
                      ____________________________________________________________
consensus             CGGTTTTTGAATATCTTTCAACCACAACAGGCAAACGATCGGGATATTTAGCAATCATAT
 
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JMFN001E10+           CTTGGGATTCCTGGAGTCTTTCCTCCAGAGAGAATTGTTGCTTAAAGGATGAAGTTTTGG
JMFF038K21+           CTTGGGATTCCTGGAGTCTTTCCTCCAGAGAGAATTGTTGCTTAAAGGATGAAGTTTTGG
rJMFF038K21-          CTTGGGATTCCTGGAGTCTTTCCTCCAGAGAGAATTGTTGCTTAAAGGATGAAGTTTTGG
JMFN033H12+           CTTGGGATTCCTGGAGTCTTTCCTCCAGAGAGAATTGTTGCTTAAAGGATGAAGTTTTGG
                      ____________________________________________________________
consensus             CTTGGGATTCCTGGAGTCTTTCCTCCAGAGAGAATTGTTGCTTAAAGGATGAAGTTTTGG
 
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JMFN001E10+           CTTTCCCCATCTTCTTCTTCAGCTGTCCAACTGAAGGACGAAATCCG             
JMFF038K21+           CTTTCCCCATCTTCTTCTTCAGCTGTCCAACTGAAGGACGAAATCCGGAAGAGGT     
rJMFF038K21-          CTTTCCCCATCTTCTTCTTCAGCTGTCCAACTGAAGGACGAAATCCGGAAGAGGT     
JMFN033H12+           CTTTCCCCATCTTCTTCTTCAGCTGTCCAACTGAAGGACGAAATCCGGAAGAGGTATATG
                      ____________________________________________________________
consensus             CTTTCCCCATCTTCTTCTTCAGCTGTCCAACTGAAGGACGAAATCCGGAAGAGGTATATG