Contig 000352:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN033G17Sequence629000352 (2)ref|XP_006373779.1|3e-115hypothetical protein POPTR_0016s05500g [Populus trichocarpa] gb|ERP51576.1| hypo
JMFS063A09Sequence551000352 (2)ref|XP_006381014.1|5e-43hypothetical protein POPTR_0006s05130g [Populus trichocarpa] gb|ERP58811.1| hypo

Alignment

This contig is upended


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JMFS063A09+                                                       CACAGATATGGATCAT
                      ____________________________________________________________
consensus                                                         CACAGATATGGATCAT
 
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JMFS063A09+           CATTCATATATATATATATATATATATATATATATAGTTTTTATTACAGACATAAGTATC
                      ____________________________________________________________
consensus             CATTCATATATATATATATATATATATATATATATAGTTTTTATTACAGACATAAGTATC
 
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JMFS063A09+           TAACTAACGTTCTGACAATCTTATTCAGTTATCCCCAAAGATGAGAGAAGCCTCACTTGC
                      ____________________________________________________________
consensus             TAACTAACGTTCTGACAATCTTATTCAGTTATCCCCAAAGATGAGAGAAGCCTCACTTGC
 
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JMFS063A09+           CTTCATCTTTGTCTTTCTTGGATTCTGCAACAACCACTTCCTAGTAAATAACTACTTAGA
                      ____________________________________________________________
consensus             CTTCATCTTTGTCTTTCTTGGATTCTGCAACAACCACTTCCTAGTAAATAACTACTTAGA
 
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JMFS063A09+           CTTAGACTAGGACTTCAACATTCCATCTGTACATTTCTTGTGCTGGAACTGGGATGCTTA
                      ____________________________________________________________
consensus             CTTAGACTAGGACTTCAACATTCCATCTGTACATTTCTTGTGCTGGAACTGGGATGCTTA
 
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JMFS063A09+           TGATCACCAATCCATTGTCAGTGTTATAGTTGAAGTCAGTAATGGCACCATCCAATGAGC
                      ____________________________________________________________
consensus             TGATCACCAATCCATTGTCAGTGTTATAGTTGAAGTCAGTAATGGCACCATCCAATGAGC
 
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JMFS063A09+           ATTTCAGAGGGCGCTGGGAGGTGTAAATTCCGAATCGGCCACACCCCCTAACGGTGAGAG
                      ____________________________________________________________
consensus             ATTTCAGAGGGCGCTGGGAGGTGTAAATTCCGAATCGGCCACACCCCCTAACGGTGAGAG
 
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JMFS063A09+           AGATCGTTGCAGTTGGTGGCCGGTTTTCGCTTAGACAAGTTGGCACCTCAGAAGAGACTA
JMFN033G17+                                          TAGACAAGTTGGCACCTCAGAAGAGACTA
                      ____________________________________________________________
consensus             AGATCGTTGCAGTTGGTGGCCGGTTTTCGCTTAGACAAGTTGGCACCTCAGAAGAGACTA
 
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JMFS063A09+           CTTCACCATCAACGTGTTCTGGCTTGTCAGAAACCAGATGGACTTCGTACTTCTCCACAG
JMFN033G17+           CTTCACCATCAACGTGTTCTGGCTTGTCAGAAACCAGATGGACTTCGTACTTCTCCACAG
                      ____________________________________________________________
consensus             CTTCACCATCAACGTGTTCTGGCTTGTCAGAAACCAGATGGACTTCGTACTTCTCCACAG
 
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JMFS063A09+           CACCGCCACTGTTGAACATGTCTAGTAAGCCAATTGGTGCAAATGAGATGTTTGG     
JMFN033G17+           CACCGCCACTGTTGAACATGTCTAGTAAGCCAATTGGTGCAAATGAGATGTTTGGGGCAA
                      ____________________________________________________________
consensus             CACCGCCACTGTTGAACATGTCTAGTAAGCCAATTGGTGCAAATGAGATGTTTGGGGCAA
 
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JMFN033G17+           TGTCCTTGAGAGGAGAGATATGGAAGAGTTCATACTCTAGAACCCCAAGAGTCACAGGCA
                      ____________________________________________________________
consensus             TGTCCTTGAGAGGAGAGATATGGAAGAGTTCATACTCTAGAACCCCAAGAGTCACAGGCA
 
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JMFN033G17+           GTGAAGCACCTTTTGGTAAGCGAACTATCTCCCCTGATCTGTAGGTGTATATAACCGTGT
                      ____________________________________________________________
consensus             GTGAAGCACCTTTTGGTAAGCGAACTATCTCCCCTGATCTGTAGGTGTATATAACCGTGT
 
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JMFN033G17+           CTCCACTCCAATCTGGACTAGCGATTTGAGCTATGGAATCAACGTCGGTAGCCTGAACAG
                      ____________________________________________________________
consensus             CTCCACTCCAATCTGGACTAGCGATTTGAGCTATGGAATCAACGTCGGTAGCCTGAACAG
 
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JMFN033G17+           AACCAGTGAGGGTGCCAGGTGATGTGTCATGAATACGCGTCTTCTTTGCAACTCGGCACC
                      ____________________________________________________________
consensus             AACCAGTGAGGGTGCCAGGTGATGTGTCATGAATACGCGTCTTCTTTGCAACTCGGCACC
 
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JMFN033G17+           AGCCAGCACCTTGGCAGTTGAACACACCAACCACACCCGTGCATTTGTTCACATTCCAAA
                      ____________________________________________________________
consensus             AGCCAGCACCTTGGCAGTTGAACACACCAACCACACCCGTGCATTTGTTCACATTCCAAA
 
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JMFN033G17+           TCTTAAGCAAGCTGGTTCCATCTCTAGCTGGATCAGTGAAAAGGCAGTCAATGGTTGGTC
                      ____________________________________________________________
consensus             TCTTAAGCAAGCTGGTTCCATCTCTAGCTGGATCAGTGAAAAGGCAGTCAATGGTTGGTC
 
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JMFN033G17+           GGCCAGGCAATTGGGCACGAAGCACTGATCCATCAGGAAGGACTAGCTTCTTCAAAAGCT
                      ____________________________________________________________
consensus             GGCCAGGCAATTGGGCACGAAGCACTGATCCATCAGGAAGGACTAGCTTCTTCAAAAGCT
 
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JMFN033G17+           CAAAGTTGTGGTTTCCAGGCTTGTCACTGACATAAATAGCAGATCCTCCAATAGATCGAG
                      ____________________________________________________________
consensus             CAAAGTTGTGGTTTCCAGGCTTGTCACTGACATAAATAGCAGATCCTCCAATAGATCGAG