Contig 000347:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN028I06Sequence659000347 (2)ref|XP_007226411.1|2e-49hypothetical protein PRUPE_ppa023371mg [Prunus persica] gb|EMJ27610.1| hypotheti
JMFS052A11Sequence474000347 (2)ref|XP_002516955.1|2e-26conserved hypothetical protein [Ricinus communis] gb|EEF45569.1| conserved hypot

Alignment

This contig is upended


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JMFN028I06-            TTTCATTTTCCATTCTCTTCTGCAATGTCGTCTAACAACAAATCTCCCATTTTTCCCTT
                      ____________________________________________________________
consensus              TTTCATTTTCCATTCTCTTCTGCAATGTCGTCTAACAACAAATCTCCCATTTTTCCCTT
 
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JMFS052A11+                                                                   AGAA
JMFN028I06-           CCCACAACCTCAACACTTCACTGACTATGTATTTGACCCTCAAGTCGACTACTTTCAGAA
                      ____________________________________________________________
consensus             CCCACAACCTCAACACTTCACTGACTATGTATTTGACCCTCAAGTCGACTACTTTCAGAA
 
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JMFS052A11+           AAATATTTTGGAAGAAACGAGGAAGCACAAGAGCTTGTCAAGATCCTTAGACGCGTTCCG
JMFN028I06-           AAATATTTTGGAAGAAACGAGGAAGCACAAGAGCTTGTCAAGATCCTTAGACGCGTTCCG
                      ____________________________________________________________
consensus             AAATATTTTGGAAGAAACGAGGAAGCACAAGAGCTTGTCAAGATCCTTAGACGCGTTCCG
 
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JMFS052A11+           TTTCAAGCCTCAAAAGCCCATTTCCAAGGAGGACATCTCCCGGAAATTCAAGAAGAGCGG
JMFN028I06-           TTTCAAGCCTCAAAAGCCCATTTCCAAGGAGGACATCTCCCGGAAATTCAAGAAGAGCGG
                      ____________________________________________________________
consensus             TTTCAAGCCTCAAAAGCCCATTTCCAAGGAGGACATCTCCCGGAAATTCAAGAAGAGCGG
 
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JMFS052A11+           CGGCCGGAAACGGTGGTGGAAGAGCGCTCTGCTATTCTTCAAGTGGAATACGACCGCCGG
JMFN028I06-           CGGCCGGAAACGGTGGTGGAAGAGCGCTCTGCTATTCTTCAAGTGGAATACGACCGCCGG
                      ____________________________________________________________
consensus             CGGCCGGAAACGGTGGTGGAAGAGCGCTCTGCTATTCTTCAAGTGGAATACGACCGCCGG
 
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JMFS052A11+           CGCCCCCCCAGTCGCCAAAACCGAGGGTGATTCCACCGAGCGTGGGGCCAACCGTAACCG
JMFN028I06-           CGCCCCCCCAGTCGCCAAAACCGAGGGTGATTCCACCGAGCGTGGGGCCAACCGTAACCG
                      ____________________________________________________________
consensus             CGCCCCCCCAGTCGCCAAAACCGAGGGTGATTCCACCGAGCGTGGGGCCAACCGTAACCG
 
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JMFS052A11+           TGCCCGCGTGAGATCCGTGTATGGGCCGGTGTACTACATCAGCGATAGTCGAAGTGGCTC
JMFN028I06-           TGCCCGCGTGAGATCCGTGTATGGGCCGGTGTACTACATCAGCGATAGTCGAAGTGGCTC
                      ____________________________________________________________
consensus             TGCCCGCGTGAGATCCGTGTATGGGCCGGTGTACTACATCAGCGATAGTCGAAGTGGCTC
 
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JMFS052A11+           CGGCGGGAAACCTTACCGTACCACCGGCCGGCCGTCGTCTACCCCGCTCGCCGGAACTTT
JMFN028I06-           CGGCGGGAAACCTTACCGTACCACCGGCCGGCCGTCGTCTACCCCGCTCGCCGGAACTTT
                      ____________________________________________________________
consensus             CGGCGGGAAACCTTACCGTACCACCGGCCGGCCGTCGTCTACCCCGCTCGCCGGAACTTT
 
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JMFS052A11+           GAGTCCTTCCGGTAAGGGTGAGGTGGAGATACCGTACGTTAGTCTCAGGGATCTTAACAT
JMFN028I06-           GAGTCCTTCCGGTAAGGGTGAGGTGGAGATACCGTACGTTAGTCTCAGGGATCTTAACAT
                      ____________________________________________________________
consensus             GAGTCCTTCCGGTAAGGGTGAGGTGGAGATACCGTACGTTAGTCTCAGGGATCTTAACAT
 
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JMFN028I06-           GGAGAAGCAGCAGTATTATAGGATGCCTGCACCCTCTTCTACCTTACCAGTCTATTTGGT
                      ____________________________________________________________
consensus             GGAGAAGCAGCAGTATTATAGGATGCCTGCACCCTCTTCTACCTTACCAGTCTATTTGGT
 
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JMFN028I06-           CACCTAAAANTTAGACTGCTAATTATTGTTGGATTGNATGCTGAGTTGAAATTATACGAC
                      ____________________________________________________________
consensus             CACCTAAAANTTAGACTGCTAATTATTGTTGGATTGNATGCTGAGTTGAAATTATACGAC