Contig 000344:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN019L18Sequence590000344 (3)ref|XP_009761731.1|7e-70PREDICTED: universal stress protein A-like protein [Nicotiana sylvestris]
JMFN020B17Sequence630000344 (3)ref|XP_009761731.1|1e-69PREDICTED: universal stress protein A-like protein [Nicotiana sylvestris]
JMFN033O17Sequence629000344 (3)ref|XP_009761731.1|8e-70PREDICTED: universal stress protein A-like protein [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN020B17+                  TCAACCACAAGTACAAACTTTGANAGTCGGAATGATACATAAGAGGCTGCTTT
JMFN033O17+                                     TTGAAAGTCGGAATGATACATAAGAGGCTGCTTT
                      ____________________________________________________________
consensus                    TCAACCACAAGTACAAACTTTGAAAGTCGGAATGATACATAAGAGGCTGCTTT
 
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JMFN020B17+           ATCCATAANAGTTTACAAGATAGACATGTATGATACATTATATGAATGTTGATATGATGA
JMFN033O17+           ATCCATAAAAGTTTACAAGATAGACATGTATGATACATTATATGAATGTTGATATGATGA
JMFN019L18+                     GTTTACAAGATAGACATGTATGATACATTATATGAATGTTGATATGATGA
                      ____________________________________________________________
consensus             ATCCATAAAAGTTTACAAGATAGACATGTATGATACATTATATGAATGTTGATATGATGA
 
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JMFN020B17+           GTTGCTTTAATAGTTGGAACAACCTTAGCGCTTGGATGGTTCTTTCACGACCGTCACCGG
JMFN033O17+           GTTGCTTTAATAGTTGGAACAACCTTAGCGCTTGGATGGTTCTTTCACGACCGTCACCGG
JMFN019L18+           GTTGCTTTAATAGTTGGAACAACCTTAGCGCTTGGATGGTTCTTTCACGACCGTCACCGG
                      ____________________________________________________________
consensus             GTTGCTTTAATAGTTGGAACAACCTTAGCGCTTGGATGGTTCTTTCACGACCGTCACCGG
 
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JMFN020B17+           ACATGTAGCATTTTGCACCACGTAGTTACTCACACTCCCAAGCAACACCCTCTTAAGGAC
JMFN033O17+           ACATGTAGCATTTTGCACCACGTAGTTACTCACACTCCCAAGCAACACCCTCTTAAGGAC
JMFN019L18+           ACATGTAGCATTTTGCACCACGTAGTTACTCACACTCCCAAGCAACACCCTCTTAAGGAC
                      ____________________________________________________________
consensus             ACATGTAGCATTTTGCACCACGTAGTTACTCACACTCCCAAGCAACACCCTCTTAAGGAC
 
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JMFN020B17+           TCCTAAACCTCTGCTTCCAAGCACAAGAGAGTGAAGCTTGAGATGATCCACAGCATCACA
JMFN033O17+           TCCTAAACCTCTGCTTCCAAGCACAAGAGAGTGAAGCTTGAGATGATCCACAGCATCACA
JMFN019L18+           TCCTAAACCTCTGCTTCCAAGCACAAGAGAGTGAAGCTTGAGATGATCCACAGCATCACA
                      ____________________________________________________________
consensus             TCCTAAACCTCTGCTTCCAAGCACAAGAGAGTGAAGCTTGAGATGATCCACAGCATCACA
 
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JMFN020B17+           TATCTTGTCCCTTGCATCTCCCCAGTATACCTTAGCCACCACCACAGCCTTTTTCTGCCT
JMFN033O17+           TATCTTGTCCCTTGCATCTCCCCAGTATACCTTAGCCACCACCACAGCCTTTTTCTGCCT
JMFN019L18+           TATCTTGTCCCTTGCATCTCCCCAGTATACCTTAGCCACCACCACAGCCTTTTTCTGCCT
                      ____________________________________________________________
consensus             TATCTTGTCCCTTGCATCTCCCCAGTATACCTTAGCCACCACCACAGCCTTTTTCTGCCT
 
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JMFN020B17+           CGACACAGTATCAAGCATGTCAAGAACCTCAGGGTCAGGGGTGAGTCCATACTTCTTACA
JMFN033O17+           CGACACAGTATCAAGCATGTCAAGAACCTCAGGGTCAGGGGTGAGTCCATACTTCTTACA
JMFN019L18+           CGACACAGTATCAAGCATGTCAAGAACCTCAGGGTCAGGGGTGAGTCCATACTTCTTACA
                      ____________________________________________________________
consensus             CGACACAGTATCAAGCATGTCAAGAACCTCAGGGTCAGGGGTGAGTCCATACTTCTTACA
 
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JMFN020B17+           CACATCCATCTCTCTAAACTCCACCAGAGGAATCAAGGGAGATCCAGTGTCCTCGAAGAG
JMFN033O17+           CACATCCATCTCTCTAAACTCCACCAGAGGAATCAAGGGAGATCCAGTGTCCTCGAAGAG
JMFN019L18+           CACATCCATCTCTCTAAACTCCACCAGAGGAATCAAGGGAGATCCAGTGTCCTCGAAGAG
                      ____________________________________________________________
consensus             CACATCCATCTCTCTAAACTCCACCAGAGGAATCAAGGGAGATCCAGTGTCCTCGAAGAG
 
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JMFN020B17+           CTGCTTGTTGGTTGGGTCGGCTTTGGGGGAGACGACGTGGATGATGACGATTCGATCGCC
JMFN033O17+           CTGCTTGTTGGTTGGGTCGGCTTTGGGGGAGACGACGTGGATGATGACGATTCGATCGCC
JMFN019L18+           CTGCTTGTTGGTTGGGTCGGCTTTGGGGGAGACGACGTGGATGATGACGATTCGATCGCC
                      ____________________________________________________________
consensus             CTGCTTGTTGGTTGGGTCGGCTTTGGGGGAGACGACGTGGATGATGACGATTCGATCGCC
 
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JMFN020B17+           TTCCGCTATCAGATTTTCAATTGCCCATTTCAGAGCTGATTTGCTTGTTGCAGAGTAGTC
JMFN033O17+           TTCCGCTATCAGATTTTCAATTGCCCATTTCAGAGCTGATTTGCTTGTTGCAGAGTAGTC
JMFN019L18+           TTCCGCTATCAGATTTTCAATTGCCCATTTCAGAGCTGATTTGCTTGTTGCAGAGTAGTC
                      ____________________________________________________________
consensus             TTCCGCTATCAGATTTTCAATTGCCCATTTCAGAGCTGATTTGCTTGTTGCAGAGTAGTC
 
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JMFN020B17+           CATTGCCACCCCAACCGACCGCGCCTTCGCCATTTCT                       
JMFN033O17+           CATTGCCACCCCAACCGACCGCGCCTTCGCCATTTCTTCTTCTTTTTGT           
JMFN019L18+           CATTGCCACCCCAACCGACCGCGCCTTCGCCATTTCTTCTTCTTTTTGTTATTTGCTCTT
                      ____________________________________________________________
consensus             CATTGCCACCCCAACCGACCGCGCCTTCGCCATTTCTTCTTCTTTTTGTTATTTGCTCTT