Contig 000342:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003K19Sequence544000342 (4)ref|XP_009622612.1|5e-75PREDICTED: 60S ribosomal protein L35-like [Nicotiana tomentosiformis] ref|XP_009
JMFN008M14Sequence528000342 (4)ref|XP_009622612.1|5e-75PREDICTED: 60S ribosomal protein L35-like [Nicotiana tomentosiformis] ref|XP_009
JMFN019F04Sequence597000342 (4)ref|XP_011089412.1|2e-74PREDICTED: 60S ribosomal protein L35-like [Sesamum indicum]
JMFN039E14Sequence570000342 (4)ref|XP_009622612.1|6e-75PREDICTED: 60S ribosomal protein L35-like [Nicotiana tomentosiformis] ref|XP_009

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN008M14+ AAATAGTCAAAACTAGAAAAATA
                      ____________________________________________________________
consensus AAATAGTCAAAACTAGAAAAATA
 
. : . : . : . : . : . :
JMFN008M14+ TTCCATCAAGCCACAGACAAAAGCAGACTATAGAAAACAAAATTTGTAAATTCATAGTTC
                      ____________________________________________________________
consensus TTCCATCAAGCCACAGACAAAAGCAGACTATAGAAAACAAAATTTGTAAATTCATAGTTC
 
. : . : . : . : . : . :
JMFN003K19+ CTACACTT
JMFN008M14+ TAACCAACATATTTGATTTGAAGCTCAAAATGACTTAACAGTAGGTATTATCCTACACTT
JMFN039E14+ CTACACTT
JMFN019F04+ CTACACTT
                      ____________________________________________________________
consensus TAACCAACATATTTGATTTGAAGCTCAAAATGACTTAACAGTAGGTATTATCCTACACTT
 
. : . : . : . : . : . :
JMFN003K19+ TAATAGCATACTTCCTCAATGGGAAGTACATTTCTTTCTTCTTCTCCCTCTCTGTCTTCA
JMFN008M14+ TAATAGCATACTTCCTCAATGGGAAGTACATTTCTTTCTTCTTCTCCCTCTCTGTCTTCA
JMFN039E14+ TAATAGCATACTTCCTCAATGGGAAGTACATTTCTTTCTTCTTCTCCCTCTCTGTCTTCA
JMFN019F04+ TAATAGCATACTTTCGCAATGGGAAGTACATCTCCTTCTTCTTTTCTCTCTCAGTCTTCA
                      ____________________________________________________________
consensus TAATAGCATACTTCCTCAATGGGAAGTACATTTCTTTCTTCTTCTCCCTCTCTGTCTTCA
 
. : . : . : . : . : . :
JMFN003K19+ ATGAGGCCTGGTGCTTGGTAAGACGCCGGCGGATGGCTCTGGTCTTCTTAGGGCGGAGAT
JMFN008M14+ ATGAGGCCTGGTGCTTGGTAAGACGCCGGCGGATGGCTCTGGTCTTCTTAGGGCGGAGAT
JMFN039E14+ ATGAGGCCTGGTGCTTGGTAAGACGCCGGCGGATGGCTCTGGTCTTCTTAGGGCGGAGAT
JMFN019F04+ AAGAGGCCTGGTGCTTAGTTAGACGCCGGCGAATAGCTCTGGTCTTCTTGGGGCGGAGGT
                      ____________________________________________________________
consensus ATGAGGCCTGGTGCTTGGTAAGACGCCGGCGGATGGCTCTGGTCTTCTTAGGGCGGAGAT
 
. : . : . : . : . : . :
JMFN003K19+ CAAGAGGCAAATACTTCTTATTTTTGTATGCTTCTCTTAGCACAGCCTTCTGCTTCTGAG
JMFN008M14+ CAAGAGGCAAATACTTCTTATTTTTGTATGCTTCTCTTAGCACAGCCTTCTGCTTCTGAG
JMFN039E14+ CAAGAGGCAAATACTTCTTATTTTTGTATGCTTCTCTTAGCACAGCCTTCTGCTTCTGAG
JMFN019F04+ CAAGGGGCAAGTACTTCTTGTTCTTGTATGCTTCCCTTAGCACAGCCTTCTGCTTCTGTG
                      ____________________________________________________________
consensus CAAGAGGCAAATACTTCTTATTTTTGTATGCTTCTCTTAGCACAGCCTTCTGCTTCTGAG
 
. : . : . : . : . : . :
JMFN003K19+ ATATCACAGTCAACACCTGTGCAATCGACAACCGGACAACCTTGATCTTCGAAAGTTTGT
JMFN008M14+ ATATCACAGTCAACACCTGTGCAATCGACAACCGGACAACCTTGATCTTCGAAAGTTTGT
JMFN039E14+ ATATCACAGTCAACACCTGTGCAATCGACAACCGGACAACCTTGATCTTCGAAAGTTTGT
JMFN019F04+ AGATCACAGTCAAAACCTGTGCAATTGACAGCCTTACCACCTTGATTTTGGAGAGCTTGT
                      ____________________________________________________________
consensus ATATCACAGTCAACACCTGTGCAATCGACAACCGGACAACCTTGATCTTCGAAAGTTTGT
 
. : . : . : . : . : . :
JMFN003K19+ TGGGGGCACCGCCGGTGACTTTGGCGACACGGAGGAGGGCAAGCTCGGCCTTGAGATCCT
JMFN008M14+ TGGGGGCACCGCCGGTGACTTTGGCGACACGGAGGAGGGCAAGCTCGGCCTTGAGATCCT
JMFN039E14+ TGGGGGCACCGCCGGTGACTTTGGCGACACGGAGGAGGGCAAGCTCGGCCTTGAGATCCT
JMFN019F04+ TAGGAGCACCTCCGGTGACCTTAGCGACACGGAGGAGGGCAAGCTCCGCCTTGAGATCCT
                      ____________________________________________________________
consensus TGGGGGCACCGCCGGTGACTTTGGCGACACGGAGGAGGGCAAGCTCGGCCTTGAGATCCT
 
. : . : . : . : . : . :
JMFN003K19+ TCAACTGAGCCAGAAGCTCCGTTTTACTCTTGTTCCTCAGCTCGTGAACCTTGATTCTAG
JMFN008M14+ TCAACTGAGCCAGAAGCTCCGTTTTACTCTTGTTCCTCAGCTCGTGAACCTTGATTCTAG
JMFN039E14+ TCAACTGAGCCAGAAGCTCCGTTTTACTCTTGTTCCTCAGCTCGTGAACCTTGATTCTAG
JMFN019F04+ TCAACTGAGCAAGCAGCTCCGACTTGTTTTTGTTCCTCAGCTCGTGAACCTTGATTCTCG
                      ____________________________________________________________
consensus TCAACTGAGCCAGAAGCTCCGTTTTACTCTTGTTCCTCAGCTCGTGAACCTTGATTCTAG
 
. : . : . : . : . : . :
JMFN003K19+ CCAT
JMFN008M14+ CCAT
JMFN039E14+ CCAT
JMFN019F04+ CCATCGCTGCTGCTCTGCTTCGTGTTCCTGCAACTGATGCTCTCGTCCTCTTTCTCTCTC
                      ____________________________________________________________
consensus CCATCGCTGCTGCTCTGCTTCGTGTTCCTGCAACTGATGCTCTCGTCCTCTTTCTCTCTC