Contig 000342:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003K19Sequence544000342 (4)ref|XP_009622612.1|5e-75PREDICTED: 60S ribosomal protein L35-like [Nicotiana tomentosiformis] ref|XP_009
JMFN008M14Sequence528000342 (4)ref|XP_009622612.1|5e-75PREDICTED: 60S ribosomal protein L35-like [Nicotiana tomentosiformis] ref|XP_009
JMFN019F04Sequence597000342 (4)ref|XP_011089412.1|2e-74PREDICTED: 60S ribosomal protein L35-like [Sesamum indicum]
JMFN039E14Sequence570000342 (4)ref|XP_009622612.1|6e-75PREDICTED: 60S ribosomal protein L35-like [Nicotiana tomentosiformis] ref|XP_009

Alignment

This contig is upended


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JMFN008M14+                                                AAATAGTCAAAACTAGAAAAATA
                      ____________________________________________________________
consensus                                                  AAATAGTCAAAACTAGAAAAATA
 
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JMFN008M14+           TTCCATCAAGCCACAGACAAAAGCAGACTATAGAAAACAAAATTTGTAAATTCATAGTTC
                      ____________________________________________________________
consensus             TTCCATCAAGCCACAGACAAAAGCAGACTATAGAAAACAAAATTTGTAAATTCATAGTTC
 
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JMFN003K19+                                                               CTACACTT
JMFN008M14+           TAACCAACATATTTGATTTGAAGCTCAAAATGACTTAACAGTAGGTATTATCCTACACTT
JMFN039E14+                                                               CTACACTT
JMFN019F04+                                                               CTACACTT
                      ____________________________________________________________
consensus             TAACCAACATATTTGATTTGAAGCTCAAAATGACTTAACAGTAGGTATTATCCTACACTT
 
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JMFN003K19+           TAATAGCATACTTCCTCAATGGGAAGTACATTTCTTTCTTCTTCTCCCTCTCTGTCTTCA
JMFN008M14+           TAATAGCATACTTCCTCAATGGGAAGTACATTTCTTTCTTCTTCTCCCTCTCTGTCTTCA
JMFN039E14+           TAATAGCATACTTCCTCAATGGGAAGTACATTTCTTTCTTCTTCTCCCTCTCTGTCTTCA
JMFN019F04+           TAATAGCATACTTTCGCAATGGGAAGTACATCTCCTTCTTCTTTTCTCTCTCAGTCTTCA
                      ____________________________________________________________
consensus             TAATAGCATACTTCCTCAATGGGAAGTACATTTCTTTCTTCTTCTCCCTCTCTGTCTTCA
 
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JMFN003K19+           ATGAGGCCTGGTGCTTGGTAAGACGCCGGCGGATGGCTCTGGTCTTCTTAGGGCGGAGAT
JMFN008M14+           ATGAGGCCTGGTGCTTGGTAAGACGCCGGCGGATGGCTCTGGTCTTCTTAGGGCGGAGAT
JMFN039E14+           ATGAGGCCTGGTGCTTGGTAAGACGCCGGCGGATGGCTCTGGTCTTCTTAGGGCGGAGAT
JMFN019F04+           AAGAGGCCTGGTGCTTAGTTAGACGCCGGCGAATAGCTCTGGTCTTCTTGGGGCGGAGGT
                      ____________________________________________________________
consensus             ATGAGGCCTGGTGCTTGGTAAGACGCCGGCGGATGGCTCTGGTCTTCTTAGGGCGGAGAT
 
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JMFN003K19+           CAAGAGGCAAATACTTCTTATTTTTGTATGCTTCTCTTAGCACAGCCTTCTGCTTCTGAG
JMFN008M14+           CAAGAGGCAAATACTTCTTATTTTTGTATGCTTCTCTTAGCACAGCCTTCTGCTTCTGAG
JMFN039E14+           CAAGAGGCAAATACTTCTTATTTTTGTATGCTTCTCTTAGCACAGCCTTCTGCTTCTGAG
JMFN019F04+           CAAGGGGCAAGTACTTCTTGTTCTTGTATGCTTCCCTTAGCACAGCCTTCTGCTTCTGTG
                      ____________________________________________________________
consensus             CAAGAGGCAAATACTTCTTATTTTTGTATGCTTCTCTTAGCACAGCCTTCTGCTTCTGAG
 
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JMFN003K19+           ATATCACAGTCAACACCTGTGCAATCGACAACCGGACAACCTTGATCTTCGAAAGTTTGT
JMFN008M14+           ATATCACAGTCAACACCTGTGCAATCGACAACCGGACAACCTTGATCTTCGAAAGTTTGT
JMFN039E14+           ATATCACAGTCAACACCTGTGCAATCGACAACCGGACAACCTTGATCTTCGAAAGTTTGT
JMFN019F04+           AGATCACAGTCAAAACCTGTGCAATTGACAGCCTTACCACCTTGATTTTGGAGAGCTTGT
                      ____________________________________________________________
consensus             ATATCACAGTCAACACCTGTGCAATCGACAACCGGACAACCTTGATCTTCGAAAGTTTGT
 
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JMFN003K19+           TGGGGGCACCGCCGGTGACTTTGGCGACACGGAGGAGGGCAAGCTCGGCCTTGAGATCCT
JMFN008M14+           TGGGGGCACCGCCGGTGACTTTGGCGACACGGAGGAGGGCAAGCTCGGCCTTGAGATCCT
JMFN039E14+           TGGGGGCACCGCCGGTGACTTTGGCGACACGGAGGAGGGCAAGCTCGGCCTTGAGATCCT
JMFN019F04+           TAGGAGCACCTCCGGTGACCTTAGCGACACGGAGGAGGGCAAGCTCCGCCTTGAGATCCT
                      ____________________________________________________________
consensus             TGGGGGCACCGCCGGTGACTTTGGCGACACGGAGGAGGGCAAGCTCGGCCTTGAGATCCT
 
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JMFN003K19+           TCAACTGAGCCAGAAGCTCCGTTTTACTCTTGTTCCTCAGCTCGTGAACCTTGATTCTAG
JMFN008M14+           TCAACTGAGCCAGAAGCTCCGTTTTACTCTTGTTCCTCAGCTCGTGAACCTTGATTCTAG
JMFN039E14+           TCAACTGAGCCAGAAGCTCCGTTTTACTCTTGTTCCTCAGCTCGTGAACCTTGATTCTAG
JMFN019F04+           TCAACTGAGCAAGCAGCTCCGACTTGTTTTTGTTCCTCAGCTCGTGAACCTTGATTCTCG
                      ____________________________________________________________
consensus             TCAACTGAGCCAGAAGCTCCGTTTTACTCTTGTTCCTCAGCTCGTGAACCTTGATTCTAG
 
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JMFN003K19+           CCAT                                                        
JMFN008M14+           CCAT                                                        
JMFN039E14+           CCAT                                                        
JMFN019F04+           CCATCGCTGCTGCTCTGCTTCGTGTTCCTGCAACTGATGCTCTCGTCCTCTTTCTCTCTC
                      ____________________________________________________________
consensus             CCATCGCTGCTGCTCTGCTTCGTGTTCCTGCAACTGATGCTCTCGTCCTCTTTCTCTCTC