Contig 000336:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017G22Sequence603000336 (3)ref|XP_009768673.1|5e-47PREDICTED: putative non-specific lipid-transfer protein 14 [Nicotiana sylvestri
JMFN033N17Sequence630000336 (3)ref|XP_009768673.1|6e-47PREDICTED: putative non-specific lipid-transfer protein 14 [Nicotiana sylvestri
JMFS043D10Sequence609000336 (3)ref|XP_009768673.1|2e-45PREDICTED: putative non-specific lipid-transfer protein 14 [Nicotiana sylvestri

Alignment

This contig is upended


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JMFN033N17+                      CATAATTCATTAGGTAAGGATACAATAGTACAATACATATGATGATTTA
                      ____________________________________________________________
consensus                        CATAATTCATTAGGTAAGGATACAATAGTACAATACATATGATGATTTA
 
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JMFN033N17+           ATTAATTGGTATATATGTATTGGATCGATCTGGCCTGGGTACACATGCATACAGCGAGCA
                      ____________________________________________________________
consensus             ATTAATTGGTATATATGTATTGGATCGATCTGGCCTGGGTACACATGCATACAGCGAGCA
 
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JMFN033N17+           AAGTGGTTCTGNAAAGCATGCAATTAAGCAGCAGCTAGCTAGCCCCGCAATTCATGCATG
                      ____________________________________________________________
consensus             AAGTGGTTCTGNAAAGCATGCAATTAAGCAGCAGCTAGCTAGCCCCGCAATTCATGCATG
 
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JMFN033N17+           TTGAAAGAAGCTAAGGAAGATGATTATATTGTTCATCCAATATATTCGCAGTCAGTGTTG
JMFS043D10+                                                     TATTCGCAGTCAGTGTTG
JMFN017G22+                                                     TATTCGCAGTCAGTGTTG
                      ____________________________________________________________
consensus             TTGAAAGAAGCTAAGGAAGATGATTATATTGTTCATCCAATATATTCGCAGTCAGTGTTG
 
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JMFN033N17+           GGATCAATTATGAAGCCAAGAGAGACACCGCAGAAGCCGGGGAGTGTGGCAATGGAAGTG
JMFS043D10+           GGATCAATTATGAAGCCAAGAGAGACACCGCAGAAGCCGGGGAGTGTGGCAATGGAAGTG
JMFN017G22+           GGATCAATTATGAAGCCAAGAGAGACACCGCAGAAGCCGGGGAGTGTGGCAATGGAAGTG
                      ____________________________________________________________
consensus             GGATCAATTATGAAGCCAAGAGAGACACCGCAGAAGCCGGGGAGTGTGGCAATGGAAGTG
 
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JMFN033N17+           GCGTTGGGGTTGTAAGTGGTGATGAGGTCCATGACGCATCTGCACACGATCTGGCGGTTG
JMFS043D10+           GCGTTGGGGTTGTAAGTGGTGATGAGGTCCATGACGCATCTGCACACGATCTGGCGGTTG
JMFN017G22+           GCGTTGGGGTTGTAAGTGGTGATGAGGTCCATGACGCATCTGCACACGATCTGGCGGTTG
                      ____________________________________________________________
consensus             GCGTTGGGGTTGTAAGTGGTGATGAGGTCCATGACGCATCTGCACACGATCTGGCGGTTG
 
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JMFN033N17+           TCGGTGGAGTCAGCGAGGTTGCTGAGGCTGAGCATGGCGACGCAGCAAGGAGAACCAGGG
JMFS043D10+           TCGGTGGAGTCAGCGAGGTTGCTGAGGCTGAGCATGGCGACGCAGCAAGGAGAACCAGGG
JMFN017G22+           TCGGTGGAGTCAGCGAGGTTGCTGAGGCTGAGCATGGCGACGCAGCAAGGAGAACCAGGG
                      ____________________________________________________________
consensus             TCGGTGGAGTCAGCGAGGTTGCTGAGGCTGAGCATGGCGACGCAGCAAGGAGAACCAGGG
 
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JMFN033N17+           ATGGGGTCCGGCGATCCGTACATCACGAAGCTCGAACAAGCTGATACTAGTGCCTTCACC
JMFS043D10+           ATGGGGTCCGGCGATCCGTACATCACGAAGCTCGAACAAGCTGATACTAGTGCCTTCACC
JMFN017G22+           ATGGGGTCCGGCGATCCGTACATCACGAAGCTCGAACAAGCTGATACTAGTGCCTTCACC
                      ____________________________________________________________
consensus             ATGGGGTCCGGCGATCCGTACATCACGAAGCTCGAACAAGCTGATACTAGTGCCTTCACC
 
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JMFN033N17+           GTTGCACAGTCTATCCCTCCTTGCTGCTCTGACGACGATTCCACCCCAATTCTCCGCCTG
JMFS043D10+           GTTGCACAGTCTATCCCTCCTTGCTGCTCTGACGACGATTCCACCCCAATTCTCCGCCTG
JMFN017G22+           GTTGCACAGTCTATCCCTCCTTGCTGCTCTGACGACGATTCCACCCCAATTCTCCGCCTG
                      ____________________________________________________________
consensus             GTTGCACAGTCTATCCCTCCTTGCTGCTCTGACGACGATTCCACCCCAATTCTCCGCCTG
 
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JMFN033N17+           CTTGTTGATAATAATATCACCATCATCATCACCGCCACTGAACCACAATATTTCAAACTC
JMFS043D10+           CTTGTTGATAATAATATCACCATCATCATCACCGCCACTGAACCACAATATTTCAAACTC
JMFN017G22+           CTTGTTGATAATAATATCACCATCATCATCACCGCCACTGAACCACAATATTTCAAACTC
                      ____________________________________________________________
consensus             CTTGTTGATAATAATATCACCATCATCATCACCGCCACTGAACCACAATATTTCAAACTC
 
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JMFN033N17+           ACTATCTCCTCCAATTTCACTATCTTCATTATATATTATTA                   
JMFS043D10+           ACTATCTCCTCCAATTTCACTATCTTCATTATATATTATTATTATTATTATTATTATTAC
JMFN017G22+           ACTATCTCCTCCAATTTCACTATCTTCATTATATATTATTATTATTATTATTATTATTAC
                      ____________________________________________________________
consensus             ACTATCTCCTCCAATTTCACTATCTTCATTATATATTATTATTATTATTATTATTATTAC
 
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JMFS043D10+           AACATTATAATAATACAGGATATATATATATTATATATATACTGTTAATTGGAATAATAA
JMFN017G22+           AACATTATAATAATACAGGATATATATATATTATATATATACTGTTAATTGGAATAATAA
                      ____________________________________________________________
consensus             AACATTATAATAATACAGGATATATATATATTATATATATACTGTTAATTGGAATAATAA