Contig 000335:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF044K04+                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
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rJMSF044K04+          TCTAAAAAATTCCTCTATTCAGTACAGGAGACTAGATGGAACTATGTCTATTGTAGCCAG
rJMSF047O23+                                                                  CCAG
                      ____________________________________________________________
consensus             TCTAAAAAATTCCTCTATTCAGTACAGGAGACTAGATGGAACTATGTCTATTGTAGCCAG
 
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rJMSF044K04+          AGACAAAGCTGTGAAAGATTTCAACACAATTCCAGAGGTGACTGTCATGATTATGTCTCT
rJMSF047O23+          AGACAAAGCTGTGAAAGATTTCAACACAATTCCAGAGGTGACTGTCATGATTATGTCTCT
                      ____________________________________________________________
consensus             AGACAAAGCTGTGAAAGATTTCAACACAATTCCAGAGGTGACTGTCATGATTATGTCTCT
 
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rJMSF044K04+          AAAAGCTGCAAGCCTGGGACTGAACTTGGTTTCAGCTTGTCATGTACTCCTCCTGGACCT
rJMSF047O23+          AAAAGCTGCAAGCCTGGGACTGAACTTGGTTTCAGCTTGTCATGTACTCCTCCTGGACCT
                      ____________________________________________________________
consensus             AAAAGCTGCAAGCCTGGGACTGAACTTGGTTTCAGCTTGTCATGTACTCCTCCTGGACCT
 
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rJMSF044K04+          GTGGTGGAACCCGACAACTGAGGATCAAGCAATTGACAGAGCACATCGCATTGGGCAGAC
rJMSF047O23+          GTGGTGGAACCCGACAACTGAGGATCAAGCAATTGACAGAGCACATCGCATTGGGCAGAC
                      ____________________________________________________________
consensus             GTGGTGGAACCCGACAACTGAGGATCAAGCAATTGACAGAGCACATCGCATTGGGCAGAC
 
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rJMSF044K04+          TCGTCCTGTTACAGTTTTGCGGTTGACTGTAAAAGATACAGTTGAAGATCGTATTTTGGC
rJMSF047O23+          TCGTCCTGTTACAGTTTTGCGGTTGACTGTAAAAGATACAGTTGAAGATCGTATTTTGGC
                      ____________________________________________________________
consensus             TCGTCCTGTTACAGTTTTGCGGTTGACTGTAAAAGATACAGTTGAAGATCGTATTTTGGC
 
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rJMSF044K04+          TCTTCAGCAAAAAAAGAGAGAAATGGTTGCATCAGCCTTCGGAGAGGATGAGAATGGTGG
rJMSF047O23+          TCTTCAGCAAAAAAAGAGAGAAATGGTTGCATCAGCCTTCGGAGAGGATGAGAATGGTGG
                      ____________________________________________________________
consensus             TCTTCAGCAAAAAAAGAGAGAAATGGTTGCATCAGCCTTCGGAGAGGATGAGAATGGTGG
 
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rJMSF044K04+          TCGACAGACTCGTCTAACAACAGAGGACTTGGAATACCTGTTCAAGATATAAATCTCGAT
rJMSF047O23+          TCGACAGACTCGTCTAACAACAGAGGACTTGGAATACCTGTTCAAGATATAAATCTCGAT
                      ____________________________________________________________
consensus             TCGACAGACTCGTCTAACAACAGAGGACTTGGAATACCTGTTCAAGATATAAATCTCGAT
 
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rJMSF044K04+          TTTTTTGCAGTATAGGTGGTGATATTTTAGTACACCATGGGCATCTCATTTCATTCTTTA
rJMSF047O23+          TTTTTTGCAGTATAGGTGGTGATATTTTAGTACACCATGGGCATCTCATTTCATTCTTTA
JMFN016L13-                                                                  CTTTA
                      ____________________________________________________________
consensus             TTTTTTGCAGTATAGGTGGTGATATTTTAGTACACCATGGGCATCTCATTTCATTCTTTA
 
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rJMSF044K04+          CCATGTAGCAGACCAGCTATGGTTCAGATTTCGAGATTCACACAATGCATCTTCAAAGTT
rJMSF047O23+          CCATGTAGCAGACCAGCTATGGTTCAGATTTCGAGATTCACACAATGCATCTTCAAAGTT
JMFN016L13-           CCATGTAGCAGACCAGCTATGGTTCAGATTTCGAGATTCACACAATGCATCTTCAAAGTT
                      ____________________________________________________________
consensus             CCATGTAGCAGACCAGCTATGGTTCAGATTTCGAGATTCACACAATGCATCTTCAAAGTT
 
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rJMSF044K04+          CTAACAATTCATTGCTCCTTGTATAGAAAGTTGGTTTTAGCATTATTATCTCAAACAGCA
rJMSF047O23+          CTAACAATTCATTGCTCCTTGTATAGAAAGTTGGTTTTAGCATTATTATCTCAAACAGCA
JMFN016L13-           CTAACAATTCATTGCTCCTTGTATAGAAAGTTGGTTTTAGCATTATTATCTCAAACAGCA
                      ____________________________________________________________
consensus             CTAACAATTCATTGCTCCTTGTATAGAAAGTTGGTTTTAGCATTATTATCTCAAACAGCA
 
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rJMSF044K04+          ACTGCAGTTTTGTTGGGCATATTGTAGATCCAATGAATTGAGTTGTTAGATGATATAGGT
rJMSF047O23+          ACTGCAGTTTTGTTGGGCATATTGTAGATCCAATGAATTGAGTTGTTAGATGATATAGGT
JMFN016L13-           ACTGCAGTTTTGTTGGGAATATTGTAGATCCAATGAATTGAGTTGTTAGATGATATAGGT
                      ____________________________________________________________
consensus             ACTGCAGTTTTGTTGGGCATATTGTAGATCCAATGAATTGAGTTGTTAGATGATATAGGT
 
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rJMSF044K04+          CATTAGTTGCACTATTTCCCATAGTTTAAGCCTTCTCAGCATAGCGATTGTTGATGTGTT
rJMSF047O23+          CATTAGTTGCACTATTTCCCATAGTTTAAGCCTTCTCAGCATAGCGATTGTTGATGTGTT
JMFN016L13-           CATTAGTTGCACTATTTCCCATAGTTTAAGCCTTCTCAGCATAGCGATTGTTGATGTGTT
                      ____________________________________________________________
consensus             CATTAGTTGCACTATTTCCCATAGTTTAAGCCTTCTCAGCATAGCGATTGTTGATGTGTT
 
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rJMSF044K04+          ATT                                                         
rJMSF047O23+          ATTTCTTATAGTGCCATG                                          
JMFN016L13-           ATTTCTTATAGTGCCATGTAACTATGAATATAAAAAGAATTCCACAAGATGTTTCAGCTC
                      ____________________________________________________________
consensus             ATTTCTTATAGTGCCATGTAACTATGAATATAAAAAGAATTCCACAAGATGTTTCAGCTC