Contig 000332:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN015P18Sequence603000332 (2)ref|XP_006379305.1|4e-21hypothetical protein POPTR_0009s14540g [Populus trichocarpa] gb|ERP57102.1| hypo
JMSF023E14Sequence659000332 (2)emb|CDP14511.1|1e-46unnamed protein product [Coffea canephora]748016098ref|NP_001275479.1|2e-61Erwinia induced protein 1 precursor [Solanum tuberosum] gb|AEJ08745.1| RSI3 [Sol

Alignment

This contig is upended


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JMSF023E14+                           CACAAATATCAAGTTGGCATCCTTTATGTTATTGGCGGCTTGAA
                      ____________________________________________________________
consensus                             CACAAATATCAAGTTGGCATCCTTTATGTTATTGGCGGCTTGAA
 
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JMSF023E14+           TTTGGTGGTCGGTCACCAGGTTCCCGAACACCTCCGCCGCGATATGGTAGAGGCCGTCGC
                      ____________________________________________________________
consensus             TTTGGTGGTCGGTCACCAGGTTCCCGAACACCTCCGCCGCGATATGGTAGAGGCCGTCGC
 
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JMSF023E14+           CGGGAACGACTGTGTAGACGGGGCGCTTGTTGGAAGTGCCGGTGCCGTTGGCGCAAGAGC
JMFN015P18+                                                                    AGC
                      ____________________________________________________________
consensus             CGGGAACGACTGTGTAGACGGGGCGCTTGTTGGAAGTGCCGGTGCCGTTGGCGCAAGAGC
 
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JMSF023E14+           AGGTGAAGGGAATCTTCAGGGTGTGGTTAGCGTTAAGGGTTTGGTTGGGAGGAGTGGTAA
JMFN015P18+           AGGTGAAGGGAATCTTCAGGGTGTGGTTAGCGTTAAGGGTTTGGTTGGGAGGAGTGGTAA
                      ____________________________________________________________
consensus             AGGTGAAGGGAATCTTCAGGGTGTGGTTAGCGTTAAGGGTTTGGTTGGGAGGAGTGGTAA
 
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JMSF023E14+           GAGGGAGGTTGTTGACGCCAAGGATAGATCGGAGGTTCTTTACATTGAAGAGGGCTTTCA
JMFN015P18+           GAGGGAGGTTGTTGACGCCAAGGATAGATCGGAGGTTCTTTACATTGAAGAGGGCTTTCA
                      ____________________________________________________________
consensus             GAGGGAGGTTGTTGACGCCAAGGATAGATCGGAGGTTCTTTACATTGAAGAGGGCTTTCA
 
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JMSF023E14+           CGGCGGAGAGAGTGGTGGTATTGGGCGAGACATAGTCTATAATAGCGTCGCAAGTGGCAG
JMFN015P18+           CGGCGGAGAGAGTGGTGGTATTGGGCGAGACATAGTCTATAATAGCGTCGCAAGTGGCAG
                      ____________________________________________________________
consensus             CGGCGGAGAGAGTGGTGGTATTGGGCGAGACATAGTCTATAATAGCGTCGCAAGTGGCAG
 
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JMSF023E14+           CAGTACCGCATTTGAAGGACGACGACGACGACTGAGCTTCTACAACCATTATCAAGGAGG
JMFN015P18+           CAGTACCGCATTTGAAGGACGACGACGACGACTGAGCTTCTACAACCATTATCAAGGAGG
                      ____________________________________________________________
consensus             CAGTACCGCATTTGAAGGACGACGACGACGACTGAGCTTCTACAACCATTATCAAGGAGG
 
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JMSF023E14+           AGATGGTAGTAGTAATTATAATTACTAATAGAAACCTATTAATAACAGAATTAGCCATTT
JMFN015P18+           AGATGGTAGTAGTAATTATAATTACTAATAGAAACCTATTAATAACAGAATTAGCCATTT
                      ____________________________________________________________
consensus             AGATGGTAGTAGTAATTATAATTACTAATAGAAACCTATTAATAACAGAATTAGCCATTT
 
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JMSF023E14+           CCACCGCCCAATTCGATAATTAAATGACTGCAGCAGGTATCTACCAGATCGAGCTTTGAC
JMFN015P18+           CCACCGCCCAATTCGATAATTAAATGACTGCAGCAGGTATCTACCAGATCGAGCTTTGAC
                      ____________________________________________________________
consensus             CCACCGCCCAATTCGATAATTAAATGACTGCAGCAGGTATCTACCAGATCGAGCTTTGAC
 
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JMSF023E14+           TAACAAGCTAAGGCCAAAGGAGATGTGCAATGTACAGCTAGATCCAAGATTAAGAATGAA
JMFN015P18+           TAACAAGCTAAGGCCAAAGGAGATGTGCAATGTACAGCTAGATCCAAGATTAAGAATGAA
                      ____________________________________________________________
consensus             TAACAAGCTAAGGCCAAAGGAGATGTGCAATGTACAGCTAGATCCAAGATTAAGAATGAA
 
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JMSF023E14+           TTCTATATAAAAAAAAGATATCGGGGGAGATAGATGGATAGAGAAAGATTCTTTTTTTTG
JMFN015P18+           TTCTATATAAAAAAAAGATATCGGGGGAGATAGATGGATAGAGAAAGATTCTTTTTTTTG
                      ____________________________________________________________
consensus             TTCTATATAAAAAAAAGATATCGGGGGAGATAGATGGATAGAGAAAGATTCTTTTTTTTG
 
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JMSF023E14+           TTCTTAATTGATTGG                                             
JMFN015P18+           TTCTTAATTGATTGGGTGATGAAGAAGAAGAAGTAGAAGAAAAAAGGATAATAACCAGGA
                      ____________________________________________________________
consensus             TTCTTAATTGATTGGGTGATGAAGAAGAAGAAGTAGAAGAAAAAAGGATAATAACCAGGA
 
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JMFN015P18+           AAGTGATGCTGTACTGGAAGGCAGGCCGGGTCGGATAGACCGGTCACTTGACTGACTGGG
                      ____________________________________________________________
consensus             AAGTGATGCTGTACTGGAAGGCAGGCCGGGTCGGATAGACCGGTCACTTGACTGACTGGG