| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF029L10 | Sequence | 569 | 000331 (7) | ref|XP_010271616.1| | 6e-84 | PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera] | |||||
| JMFN008C23 | Sequence | 548 | 000331 (7) | ref|XP_007039159.1| | 2e-88 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
| JMFN013B16 | Sequence | 541 | 000331 (7) | ref|XP_007039159.1| | 3e-88 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
| JMFN015G15 | Sequence | 552 | 000331 (7) | ref|XP_007039159.1| | 2e-88 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
| JMFN018B14 | Sequence | 536 | 000331 (7) | ref|XP_007039159.1| | 2e-88 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
| JMFN033H02 | Sequence | 553 | 000331 (7) | ref|XP_007039159.1| | 4e-88 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
| JMFN039L09 | Sequence | 573 | 000331 (7) | ref|XP_007039159.1| | 2e-88 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
This contig is upended
. : . : . : . : . : . :
JMFN013B16+ AAAATAA
JMFN018B14+ AGAAAATAA
JMFN008C23+ CAAGAAAATAA
JMFN039L09+ CAAGAAAATAA
JMFN015G15+ TCAAGAAAATAA
____________________________________________________________
consensus TCAAGAAAATAA
. : . : . : . : . : . :
JMFN013B16+ GGATGATGATATTATGATCAGCAAGCTAAAATCTTGACAACATCAAGAATCCAACAAACA
JMFN018B14+ GGATGATGATATTATGATCAGCAAGCTAAAATCTTGACAACATCAAGAATCCAACAAACA
rJMFF029L10- TTATGATCAGCAAGCTAAAATCTTGACAACATCAAGAATCCAACAAACA
JMFN008C23+ GGATGATGATATTATGATCAGCAAGCTAAAATCTTGACAACATCAAGAATCCAACAAACA
JMFN039L09+ GGATGATGATATTATGATCAGCAAGCTAAAATCTTGACAACATCAAGAATCCAACAAACA
JMFN015G15+ GGATGATGATATTATGATCAGCAAGCTAAAATCTTGACAACATCAAGAATCCAACAAACA
____________________________________________________________
consensus GGATGATGATATTATGATCAGCAAGCTAAAATCTTGACAACATCAAGAATCCAACAAACA
. : . : . : . : . : . :
JMFN013B16+ GTGACAAGGAATAAATATCTTTAAGCACAGCCCAATAAGAAAGCAATCCAAGCACTCCAG
JMFN018B14+ GTGACAAGGAATAAATATCTTTAAGCACAGCCCAATAAGAAAGCAATCCAAGCACTCCAG
rJMFF029L10- GTGACAAGGAATAAATATCTTTAAGCACAGCCCAATAAGAAAGCAATCCAAGCACTCCAG
JMFN008C23+ GTGACAAGGAATAAATATCTTTAAGCACAGCCCAATAAGAAAGCAATCCAAGCACTCCAG
JMFN039L09+ GTGACAAGGAATAAATATCTTTAAGCACAGCCCAATAAGAAAGCAATCCAAGCACTCCAG
JMFN015G15+ GTGACAAGGAATAAATATCTTTAAGCACAGCCCAATAAGAAAGCAATCCAAGCACTCCAG
____________________________________________________________
consensus GTGACAAGGAATAAATATCTTTAAGCACAGCCCAATAAGAAAGCAATCCAAGCACTCCAG
. : . : . : . : . : . :
JMFN013B16+ CCGAATACACATCTACTTGATCTTCTTCTTCGGCCTCAACTGGTTACTATGGCCACACTT
JMFN018B14+ CCGAATACACATCTACTTGATCTTCTTCTTCGGCCTCAACTGGTTACTATGGCCACACTT
rJMFF029L10- CCGAATACACATCTACTTGATCTTCTTCTTCGGCCTCAACTGGTTACTATGGCCACACTT
JMFN033H02+ TACTTGATCTTCTTCTTCGGCCTCAACTGGTTACTATGGCCACACTT
JMFN008C23+ CCGAATACACATCTACTTGATCTTCTTCTTCGGCCTCAACTGGTTACTATGGCCACACTT
JMFN039L09+ CCGAATACACATCTACTTGATCTTCTTCTTCGGCCTCAACTGGTTACTATGGCCACACTT
JMFN015G15+ CCGAATACACATCTACTTGATCTTCTTCTTCGGCCTCAACTGGTTACTATGGCCACACTT
____________________________________________________________
consensus CCGAATACACATCTACTTGATCTTCTTCTTCGGCCTCAACTGGTTACTATGGCCACACTT
. : . : . : . : . : . :
JMFN013B16+ CTTCTTCCTGCAGTTGACAGCACGGGGGTGCAGACGAGCATAGCATTTGCGGCAAATCAT
JMFN018B14+ CTTCTTCCTGCAGTTGACAGCACGGGGGTGCAGACGAGCATAGCATTTGCGGCAAATCAT
rJMFF029L10- CTTCTTCCTGCAGTTGACNGCACGGGGGTGCAGACGAGCATAGCATTTGCGGCAAATCAT
JMFN033H02+ CTTCTTCCTGCAGTTGACAGCACGGGGGTGCAGACGAGCATAGCATTTGCGGCAAATCAT
JMFN008C23+ CTTCTTCCTGCAGTTGACAGCACGGGGGTGCAGACGAGCATAGCATTTGCGGCAAATCAT
JMFN039L09+ CTTCTTCCTGCAGTTGACAGCACGGGGGTGCAGACGAGCATAGCATTTGCGGCAAATCAT
JMFN015G15+ CTTCTTCCTGCAGTTGACAGCACGGGGGTGCAGACGAGCATAGCATTTGCGGCAAATCAT
____________________________________________________________
consensus CTTCTTCCTGCAGTTGACAGCACGGGGGTGCAGACGAGCATAGCATTTGCGGCAAATCAT
. : . : . : . : . : . :
JMFN013B16+ CTTGTCCTGATTATATTTGCGGGCCAAAGCCATGAGAGATGGTTCAATGATCCCACCTCT
JMFN018B14+ CTTGTCCTGATTATATTTGCGGGCCAAAGCCATGAGAGATGGTTCAATGATCCCACCTCT
rJMFF029L10- CTTGTCCTGATTATATTTGCGGGCCAAAGCCATGAGAGATGGTTCAATGATCCCACCTCT
JMFN033H02+ CTTGTCCTGATTATATTTGCGGGCCAAAGCCATGAGAGATGGTTCAATGATCCCACCTCT
JMFN008C23+ CTTGTCCTGATTATATTTGCGGGCCAAAGCCATGAGAGATGGTTCAATGATCCCACCTCT
JMFN039L09+ CTTGTCCTGATTATATTTGCGGGCCAAAGCCATGAGAGATGGTTCAATGATCCCACCTCT
JMFN015G15+ CTTGTCCTGATTATATTTGCGGGCCAAAGCCATGAGAGATGGTTCAATGATCCCACCTCT
____________________________________________________________
consensus CTTGTCCTGATTATATTTGCGGGCCAAAGCCATGAGAGATGGTTCAATGATCCCACCTCT
. : . : . : . : . : . :
JMFN013B16+ AAGTCTCAGAACCAGATGCAAGGTAGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCG
JMFN018B14+ AAGTCTCAGAACCAGATGCAAGGTAGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCG
rJMFF029L10- AAGTCTCANAACCANATGCAAGGNAGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCG
JMFN033H02+ AAGTCTCAGAACCAGATGCAAGGTAGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCG
JMFN008C23+ AAGTCTCAGAACCAGATGCAAGGTAGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCG
JMFN039L09+ AAGTCTCAGAACCAGATGCAAGGTAGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCG
JMFN015G15+ AAGTCTCAGAACCAGATGCAAGGTAGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCG
____________________________________________________________
consensus AAGTCTCAGAACCAGATGCAAGGTAGATTCCTTTTGGATATTGTAATCAGCAAGGGTGCG
. : . : . : . : . : . :
JMFN013B16+ GCCATCTTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGTGGAATGCCTTC
JMFN018B14+ GCCATCTTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGTGGAATGCCTTC
rJMFF029L10- GCCATCTTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGTGGAATGCCTTC
JMFN033H02+ GCCATCTTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGTGGAATGCCTTC
JMFN008C23+ GCCATCTTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGTGGAATGCCTTC
JMFN039L09+ GCCATCTTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGTGGAATGCCTTC
JMFN015G15+ GCCATCTTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGTGGAATGCCTTC
____________________________________________________________
consensus GCCATCTTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGTGGAATGCCTTC
. : . : . : . : . : . :
JMFN013B16+ TTTGTCTTGAATCTTAGCCTTAACATTGTCGATGGTGTCGCTCGATTCAACCTCGAGAGT
JMFN018B14+ TTTGTCTTGAATCTTAGCCTTAACATTGTCGATGGTGTCGCTCGATTCAACCTCGAGAGT
rJMFF029L10- TTTGTCTTGAATCTTANCCTTAACATTGTCGATGGTGTCGCTCGATTCAACCTCGAGAGT
JMFN033H02+ TTTGTCTTGAATCTTAGCCTTAACATTGTCGATGGTGTCGCTCGATTCAACCTCGAGAGT
JMFN008C23+ TTTGTCTTGAATCTTAGCCTTAACATTGTCGATGGTGTCGCTCGATTCAACCTCGAGAGT
JMFN039L09+ TTTGTCTTGAATCTTAGCCTTAACATTGTCGATGGTGTCGCTCGATTCAACCTCGAGAGT
JMFN015G15+ TTTGTCTTGAATCTTAGCCTTAACATTGTCGATGGTGTCGCTCGATTCAACCTCGAGAGT
____________________________________________________________
consensus TTTGTCTTGAATCTTAGCCTTAACATTGTCGATGGTGTCGCTCGATTCAACCTCGAGAGT
. : . : . : . : . : . :
JMFN013B16+ GATGGTTTTTCCGGTTAGAGTTTTCACGAAAATCTGCATTTTGCTTCCTTCTTC
JMFN018B14+ GATGGTTTTTCCGGTTAGAGTTTTCACGAAAATCTGCATTTTGCTTC
rJMFF029L10- GATGGT
JMFN033H02+ GATGGTTTTTCCGGTTAGAGTTTTCACGAAAATCTGCATTTTGCTTCCTTCTTC
JMFN008C23+ GATGGTTTTTCCGGTTAGAGTTTTCACGAAAATCTGCATTTTGCTTCCTTCTTCA
JMFN039L09+ GATGGTTTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT
JMFN015G15+ GATGGTTTTTCCGGTTAGAGTTTTCACGAAAATCTGCATTTTGCTTCCTTCTTCAGAGCT
____________________________________________________________
consensus GATGGTTTTTCCGGTTAGAGTTTTCACGAAAATCTGCATTTTGCTTCCTTCTTCAGAGCT