Contig 000330:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF045D21-          CCCCTGGAGAGTTTTTTTTTTTTTTTTAGCCATTGAAAGAGTCTTGAATTTTGCTGATTT
                      ____________________________________________________________
consensus             CCCCTGGAGAGTTTTTTTTTTTTTTTTAGCCATTGAAAGAGTCTTGAATTTTGCTGATTT
 
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rJMFF045D21-          AGCTTTAAACTTAATGACAATGATTATATGAAGGCATAAAGCATTTAAATTTGCTGCTAT
                      ____________________________________________________________
consensus             AGCTTTAAACTTAATGACAATGATTATATGAAGGCATAAAGCATTTAAATTTGCTGCTAT
 
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rJMFF045D21-          ATGTTGTACAGAACAAGTAGGTCTGATGTTCTATACTTATTCTATGCATGATAGGTTAAA
JMFF045D21+                 TACAGAACAAGTAGGTCTGATGTTCTATACTTATTCTATGCATGATAGGTTAAA
                      ____________________________________________________________
consensus             ATGTTGTACAGAACAAGTAGGTCTGATGTTCTATACTTATTCTATGCATGATAGGTTAAA
 
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rJMFF045D21-          ACTTATGGGCTCTTGCCAAGTTAGCTCTCATCTGAATCCACGACAATGTAGTGTTAAACA
JMFF045D21+           ACTTATGGGCTCTTGCCAAGTTAGCTCTCATCTGAATCCACGACAATGTAGTGTTAAACA
                      ____________________________________________________________
consensus             ACTTATGGGCTCTTGCCAAGTTAGCTCTCATCTGAATCCACGACAATGTAGTGTTAAACA
 
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rJMFF045D21-          CGAGCTCAACACTTTCATTTGGTTCACCAATCAATTGATGCCACATGCCCGCAAAAATCT
JMFF045D21+           CGAGCTCAACACTTTCATTTGGTTCACCAATCAATTGATGCCACATGCCCGCAAAAATCT
                      ____________________________________________________________
consensus             CGAGCTCAACACTTTCATTTGGTTCACCAATCAATTGATGCCACATGCCCGCAAAAATCT
 
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rJMFF045D21-          TTAAGGTCTTGTCCTTACTCGCTGCTGATTTGAACACAGCCTTCACGGCGTTTTGGTCAC
JMFF045D21+           TTAAGGTCTTGTCCTTACTCGCTGCTGATTTGAACACAGCCTTCACGGCGTTTTGGTCAC
                      ____________________________________________________________
consensus             TTAAGGTCTTGTCCTTACTCGCTGCTGATTTGAACACAGCCTTCACGGCGTTTTGGTCAC
 
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rJMFF045D21-          ACACTTTATCATCTCCGCCTTGAAGAATTAGCAAAGGAACTTCCAGCTCATGACAGTTGT
JMFF045D21+           ACACTTTATCATCTCCGCCTTGAAGAATTAGCAAAGGAACTTCCAGCTCATGACAGTTGT
                      ____________________________________________________________
consensus             ACACTTTATCATCTCCGCCTTGAAGAATTAGCAAAGGAACTTCCAGCTCATGACAGTTGT
 
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rJMFF045D21-          TCTGTATATATTTGCAAACCTTCAGAAGCTCTAAAGCAGTGGCAGCCGGTGGCCTTTCGT
JMFF045D21+           TCTGTATATATTTGCAAACCTTCAGAAGCTCTAAAGCAGTGGCAGCCGGTGGCCTTTCGT
JMFN033K01+                                                   GGCAGCCGGTGGCCTTTCGT
                      ____________________________________________________________
consensus             TCTGTATATATTTGCAAACCTTCAGAAGCTCTAAAGCAGTGGCAGCCGGTGGCCTTTCGT
 
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rJMFF045D21-          TGGGGAAGCGGTTAGGACTCTTTGCAACCAATTTTTTCTTCAACACTTCTCTGTATGATT
JMFF045D21+           TGGGGAAGCGGTTAGGACTCTTTGCAACCAATTTTTTCTTCAACACTTCTCTGTATGATT
JMFN033K01+           TGGGGAAGCGGTTAGGACTCTTTGCAACCAATTTTTTCTTCAACACTTCTCTGTATGATT
                      ____________________________________________________________
consensus             TGGGGAAGCGGTTAGGACTCTTTGCAACCAATTTTTTCTTCAACACTTCTCTGTATGATT
 
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rJMFF045D21-          CCCTGGAAGGAGGTTTGGTGAATATGATCCTCCAATTGNGTGCGAAAAAGGCAGCCAGGG
JMFF045D21+           CCCTGGAAGGAGGTTTGGTGAATATGATCCTCCAATTGGGTGCGAAAAAGGCAGCCAGGG
JMFN033K01+           CCCTGGAAGGAGGTTTGGTGAATATGATCCTCCAATTGGGTGCGAAAAAGGCAGCCAGGG
JMFN015F06+                                                GGGTGCGAAAAAGGCAGCCA-GG
                      ____________________________________________________________
consensus             CCCTGGAAGGAGGTTTGGTGAATATGATCCTCCAATTGGGTGCGAAAAAGGCAGCCAGGG
 
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rJMFF045D21-          GGAAGGAATTCCTCGAGTGGCCAAATGGGTTTGTATTTCTTTG                 
JMFF045D21+           GG-AGGAATTCCTCGAGTGGCCAAATGGGTTTGTATTTCTTTGAGACTCCACACATCGGT
JMFN033K01+           GG-AGGAATTCCTCGAGTGGCCAAATGGGTTTGTATTTCTTTGAGACTCCACACATCGGT
JMFN015F06+           GG-AGGAATTCCTCGAGTGGCCAAATGGGTTTGTATTTCTTTGAGACTCCACACATCGGT
                      ____________________________________________________________
consensus             GG-AGGAATTCCTCGAGTGGCCAAATGGGTTTGTATTTCTTTGAGACTCCACACATCGGT
 
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JMFF045D21+           CCACTCAGTATCAAGCCATTCCAGACATGTTTTTGGTTGAGGCATATGAGAATGGCGATT
JMFN033K01+           CCACTCAGTATCAAGCCATTCCAGACATGTTTTTGGTTGAGGCATATGAGAATGGCGATT
JMFN015F06+           CCACTCAGTATCAAGCCATTCCAGACATGTTTTTGGTTGAGGCATATGAGAATGGCGATT
                      ____________________________________________________________
consensus             CCACTCAGTATCAAGCCATTCCAGACATGTTTTTGGTTGAGGCATATGAGAATGGCGATT
 
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JMFF045D21+           GCCCCGCCTAGTGATTCCCCGTAGAGGAAAGCCGGGAGCTTGGGGTGATGAG        
JMFN033K01+           GCCCCGCCTAGTGATTCCCCGTAGAGGAAAGCCGGGAGCTTGGGGTGATGAGCTCGAGCC
JMFN015F06+           GCCCCGCCTAGTGATTCCCCGTAGAGGAAAGCCGGGAGCTTGGGGTGATGAGCTCGAGCC
                      ____________________________________________________________
consensus             GCCCCGCCTAGTGATTCCCCGTAGAGGAAAGCCGGGAGCTTGGGGTGATGAGCTCGAGCC
 
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JMFN033K01+           GAGTCCAAGCACAGAATGCAATCATGAACTACAGGATCAATCCTGGGGATATGACCCCGC
JMFN015F06+           GAGTCCAAGCACAGAATGCAATCATGAACTACAGGATCAATCCTGGGGATATGACCCCGC
                      ____________________________________________________________
consensus             GAGTCCAAGCACAGAATGCAATCATGAACTACAGGATCAATCCTGGGGATATGACCCCGC
 
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JMFN033K01+           CTCCCTTCAGAGTAGCCGTGGCCTGGCAGGTCAATCGCGTAGACAAAAAGCCCCGTTTTG
JMFN015F06+           CTCCCTTCAGAGTAGCCGTGGCCTGGCAGGTCAATCGCGTAGACAAAAAGCCCCGTTTTG
                      ____________________________________________________________
consensus             CTCCCTTCAGAGTAGCCGTGGCCTGGCAGGTCAATCGCGTAGACAAAAAGCCCCGTTTTG
 
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JMFN033K01+           GCCATGGCCACTGCATTGAGCTCGAATAGCCAGCTGCTCTCTGAAGTGTAGCCATGGATC
JMFN015F06+           GCCATGGCCACTGCATTGAGCTCGAATAGCCAGCTGCTCTCTGAAGTGTAGCCATGGATC
                      ____________________________________________________________
consensus             GCCATGGCCACTGCATTGAGCTCGAATAGCCAGCTGCTCTCTGAAGTGTAGCCATGGATC
 
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JMFN033K01+           ATGCAAACGACTCCTCTCGGTTCATCACACGAATCGTGCTGCCAAGATTGGGTGAAAATC
JMFN015F06+           ATGCAAACGACTCCTCTCGGTTCATCACACGAATCGTGCTGCCAAGATTGGGTGAAAATC
                      ____________________________________________________________
consensus             ATGCAAACGACTCCTCTCGGTTCATCACACGAATCGTGCTGCCAAGATTGGGTGAAAATC
 
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JMFN033K01+           TTCTTCTGGTTTTCGTTTAACACGAAGCCTTCTTTGTGTATGATGTGGTGTTTCTTGTAG
JMFN015F06+           TTCTTCTGGTTTTCGTTTAACACGAAGCCTTCTTTGTGTATGATGTGGTGTTTCTTGTAG
                      ____________________________________________________________
consensus             TTCTTCTGGTTTTCGTTTAACACGAAGCCTTCTTTGTGTATGATGTGGTGTTTCTTGTAG
 
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JMFN033K01+           AA                                                          
JMFN015F06+           AACTCTTCCCTGGAGAGATCTCCATAAGGGCTGGTTTCATTGGCTTGGAAGATTGGGTGT
                      ____________________________________________________________
consensus             AACTCTTCCCTGGAGAGATCTCCATAAGGGCTGGTTTCATTGGCTTGGAAGATTGGGTGT
 
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JMFN015F06+           GCCATTTTTTACTTTCTGTGTTGATACCAGAAGATCATATCCCCAAGGTATTAGAAGCCA
                      ____________________________________________________________
consensus             GCCATTTTTTACTTTCTGTGTTGATACCAGAAGATCATATCCCCAAGGTATTAGAAGCCA