Contig 000328:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN014G02Sequence618000328 (3)ref|XP_009779120.1|2e-41PREDICTED: protein RADIALIS-like 4 [Nicotiana sylvestris]
JMFN016B12Sequence468000328 (3)ref|XP_009779120.1|6e-29PREDICTED: protein RADIALIS-like 4 [Nicotiana sylvestris]
JMFN018N10Sequence554000328 (3)ref|XP_009779120.1|1e-41PREDICTED: protein RADIALIS-like 4 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN016B12+                                               AATAGATTAAGGATTATATACGTA
JMFN014G02+                                                     TTAAGGATTATATACGTA
                      ____________________________________________________________
consensus                                                 AATAGATTAAGGATTATATACGTA
 
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JMFN016B12+           CATACATTGCCATAAACGNCGATATACATATATAGATATGGAAGAAACATATATATTATA
JMFN018N10+                                          ATAGATATGGAAGAAACATATATATTATA
JMFN014G02+           CATACATTGCCATAAACGNCGATATACATATATAGATATGGAAGAAACATATATATTATA
                      ____________________________________________________________
consensus             CATACATTGCCATAAACGNCGATATACATATATAGATATGGAAGAAACATATATATTATA
 
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JMFN016B12+           TTACAACATAAAGTGGTGAATAATTAGTACTGAAAATTAAAGGATCGGACTACCGCAGAA
JMFN018N10+           TTNCAACATAAAGTGGTGAATAATTAGTACTGAAAATTAAAGGATCGGACTACCGCAGAA
JMFN014G02+           TTNCAACATAAAGTGGTGAATAATTAGTACTGAAAATTAAAGGATCGGACTACCGCAGAA
                      ____________________________________________________________
consensus             TTACAACATAAAGTGGTGAATAATTAGTACTGAAAATTAAAGGATCGGACTACCGCAGAA
 
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JMFN016B12+           GACATGACAGCAGATTAGATTATTTTGAGATCGGATGAAATCTACGGTGATGACAGATCC
JMFN018N10+           GACATGACAGCAGATTAGATTATTTTGAGATCGGATGAAATCTACGGTGATGACAGATCC
JMFN014G02+           GACATGACAGCAGATTAGATTATTTTGAGATCGGATGAAATCTACGGTGATGACAGATCC
                      ____________________________________________________________
consensus             GACATGACAGCAGATTAGATTATTTTGAGATCGGATGAAATCTACGGTGATGACAGATCC
 
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JMFN016B12+           ATATCGAACCCCATCGTCATCTTATTAATCTTCTAATCAGACCTCTTCTTATTGCAGCTT
JMFN018N10+           ATATCGAACCCCATCGTCATCTTATTAATCTTCTAATCAGACCTCTTCTTATTGCAGCTT
JMFN014G02+           ATATCGAACCCCATCGTCATCTTATTAATCTTCTAATCAGACCTCTTCTTATTGCAGCTT
                      ____________________________________________________________
consensus             ATATCGAACCCCATCGTCATCTTATTAATCTTCTAATCAGACCTCTTCTTATTGCAGCTT
 
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JMFN016B12+           AAGAAACCTCAGAAGCCTTTGCTCATCAACGGCGGTGGTCTTGTAGGCCGGGAGAGGAAC
JMFN018N10+           AAGAAACCTCAGAAGCCTTTGCTCATCAACGGCGGTGGTCTTGTAGGCCGGGAGAGGAAC
JMFN014G02+           AAGAAACCTCAGAAGCCTTTGCTCATCAACGGCGGTGGTCTTGTAGGCCGGGAGAGGAAC
                      ____________________________________________________________
consensus             AAGAAACCTCAGAAGCCTTTGCTCATCAACGGCGGTGGTCTTGTAGGCCGGGAGAGGAAC
 
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JMFN016B12+           GTCGCCGCACTCTATACGGCGCAGATCCTCCAGAAGGATCTCATAGTGGCGCTTGACGTC
JMFN018N10+           GTCGCCGCACTCTATACGGCGCAGATCCTCCAGAAGGATCTCATAGTGGCGCTTGACGTC
JMFN014G02+           GTCGCCGCACTCTATACGGCGCAGATCCTCCAGAAGGATCTCATAGTGGCGCTTGACGTC
                      ____________________________________________________________
consensus             GTCGCCGCACTCTATACGGCGCAGATCCTCCAGAAGGATCTCATAGTGGCGCTTGACGTC
 
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JMFN016B12+           GTCGGCGGACTTGCCGCCACCCACAGCTCTGGCGACATTCTGCCACCGGTCCGGCGTGTC
JMFN018N10+           GTCGGCGGACTTGCCGCCACCCACAGCTCTGGCGACATTCTGCCACCGGTCCGGCGTGTC
JMFN014G02+           GTCGGCGGACTTGCCGCCACCCACAGCTCTGGCGACATTCTGCCACCGGTCCGGCGTGTC
                      ____________________________________________________________
consensus             GTCGGCGGACTTGCCGCCACCCACAGCTCTGGCGACATTCTGCCACCGGTCCGGCGTGTC
 
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JMFN016B12+           CTTGTCAAACGTCGCCAAAGCCTT                                    
JMFN018N10+           CTTGTCAAACGTCGCCAAAGCCTTCTCAAACAACTTGTTTTGGCGGGGAGTCCATGAAGA
JMFN014G02+           CTTGTCAAACGTCGCCAAAGCCTTCTCAAACAACTTGTTTTGGCGGGGAGTCCATGAAGA
                      ____________________________________________________________
consensus             CTTGTCAAACGTCGCCAAAGCCTTCTCAAACAACTTGTTTTGGCGGGGAGTCCATGAAGA
 
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JMFN018N10+           ACGAAAGGAACTTGATGCCATTGCAACTTCTTATTATTTATTTTAAAAGGGAAAAAAAAA
JMFN014G02+           ACGAAAGGAACTTGATGCCATTGCAACTTCTTATTATTTATTTTAAAAGGGAAAAAAAAA
                      ____________________________________________________________
consensus             ACGAAAGGAACTTGATGCCATTGCAACTTCTTATTATTTATTTTAAAAGGGAAAAAAAAA
 
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JMFN018N10+           AAACCAAAAAAGAAAGAAGAGAATTGAAAAGAGTGGAGCAGATAA               
JMFN014G02+           AAACCAAAAAAGAAAGAAGAGAATTGAAAAGAGTGGAGCAGATAAGGAAAGAGAGATTGA
                      ____________________________________________________________
consensus             AAACCAAAAAAGAAAGAAGAGAATTGAAAAGAGTGGAGCAGATAAGGAAAGAGAGATTGA