Contig 000318:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011N15Sequence476000318 (3)ref|XP_003598186.1|4e-05Ceramide kinase [Medicago truncatula] gb|AES68437.1| ceramide kinase-like protei
JMSF029K22Sequence663013410 (2)ref|XP_010258809.1|2e-33PREDICTED: ceramide kinase-like isoform X1 [Nelumbo nucifera]750000318 (3)ref|XP_010320731.1|2e-82PREDICTED: ceramide kinase isoform X3 [Solanum lycopersicum]
JMSF049M12Sequence601013410 (2)ref|XP_010258809.1|6e-39PREDICTED: ceramide kinase-like isoform X1 [Nelumbo nucifera]816000318 (3)ref|XP_010320731.1|1e-99PREDICTED: ceramide kinase isoform X3 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF049M12+                                                                GGATGG
                      ____________________________________________________________
consensus                                                                   GGATGG
 
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rJMSF049M12+          GACCTGTACGATATGATTTGCAGGAACTAAAGTGTTCCTTCGACATAGCTCGTATGAGGC
                      ____________________________________________________________
consensus             GACCTGTACGATATGATTTGCAGGAACTAAAGTGTTCCTTCGACATAGCTCGTATGAGGC
 
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rJMSF049M12+          AGAAGTTGCATATTTGGAAGTTGATTCAAAGAAAGCAAACTTGGGTGAACAGGGAGGGCT
rJMSF029K22+                       TTGGAAGTTGATTCNAAGAAAGCAAACTT-GGTGAACAGGGAGGGCT
                      ____________________________________________________________
consensus             AGAAGTTGCATATTTGGAAGTTGATTCAAAGAAAGCAAACTTGGGTGAACAGGGAGGGCT
 
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rJMSF049M12+          ACAAGTGTGTAGGAAAAAGTCACTTTGTAGCCTACGTAAGAAGCCCGAAAGAATAGTGTG
rJMSF029K22+          ACAAGTGTGTAGGAAAAAGTCACTTTGTAGCCTACGTAAGAAGCCCGAAAGAATAGTGTG
                      ____________________________________________________________
consensus             ACAAGTGTGTAGGAAAAAGTCACTTTGTAGCCTACGTAAGAAGCCCGAAAGAATAGTGTG
 
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rJMSF049M12+          TCGTGTGAACTGCAATGTTTGTAACTTAAAAGCAGGCGAAACATCACCAAGACATGAGAT
rJMSF029K22+          TCGTGTGAACTGCAATGTTTGTAACTTAAAAGCAGGCGAAACATCACCAAGACATGAGAT
                      ____________________________________________________________
consensus             TCGTGTGAACTGCAATGTTTGTAACTTAAAAGCAGGCGAAACATCACCAAGACATGAGAT
 
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rJMSF049M12+          ATCTGAAACATACTCAATGGGACCAAACTCGAAGGAATCGAGATGGTTGAAGTCCAAAGG
rJMSF029K22+          ATCTGAAACATACTCAATGGGACCAAACTCGAAGGAATCGAGATGGTTGAAGTCCAAAGG
                      ____________________________________________________________
consensus             ATCTGAAACATACTCAATGGGACCAAACTCGAAGGAATCGAGATGGTTGAAGTCCAAAGG
 
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rJMSF049M12+          GCGGTTTCTAAGTATTGGTGGTGCAATAATATCTTGTCGAAACGAAAGAGCTCCTGATGG
rJMSF029K22+          GCGGTTTCTAAGTATTGGTGGTGCAATAATATCTTGTCGAAACGAAAGAGCTCCTGATGG
                      ____________________________________________________________
consensus             GCGGTTTCTAAGTATTGGTGGTGCAATAATATCTTGTCGAAACGAAAGAGCTCCTGATGG
 
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rJMSF049M12+          CCTGGTGGCCGATGCACATCTTTCAGATGGTTTCTTACATCTTATATTGATCAAAGACTG
rJMSF029K22+          CCTGGTGGCCGATGCACATCTTTCAGATGGTTTCTTACATCTTATATTGATCAAAGACTG
                      ____________________________________________________________
consensus             CCTGGTGGCCGATGCACATCTTTCAGATGGTTTCTTACATCTTATATTGATCAAAGACTG
 
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rJMSF049M12+          CCCTCATGCATGTTATTTATGGCATCTTACCCAGCTTGCAAAGAAGGGCGGGAATCCCTT
rJMSF029K22+          CCCTCATGCATGTTATTTATGGCATCTTACCCAGCTTGCAAAGAAGGGCGGGAATCCCTT
                      ____________________________________________________________
consensus             CCCTCATGCATGTTATTTATGGCATCTTACCCAGCTTGCAAAGAAGGGCGGGAATCCCTT
 
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rJMSF049M12+          GGATTTTCAGTTCGTTGAGCACCACAAGACGACAGCTTTCACGTTCACTTCTTTTGGGAA
rJMSF029K22+          GGATTTTCAGTTCGTTGAGCACCACAAGACGACAGCTTTCACGTTCACTTCTTTTGGGAA
                      ____________________________________________________________
consensus             GGATTTTCAGTTCGTTGAGCACCACAAGACGACAGCTTTCACGTTCACTTCTTTTGGGAA
 
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rJMSF049M12+          GGAGAGCGTATGGAACATAGATGGCGAGCCCTTCCAAGCGCATCAACTCTCGGCGCAAGT
rJMSF029K22+          GGAGAGCGTATGGAACATAGATGGCGAGCCCTTCCAAGCGCATCAACTCTCGGCGCAAGT
JMFN011N15-                                                 CGCATCAACTCTCGGCGCAAGT
                      ____________________________________________________________
consensus             GGAGAGCGTATGGAACATAGATGGCGAGCCCTTCCAAGCGCATCAACTCTCGGCGCAAGT
 
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rJMSF049M12+          TTTCCGCGGCCTCATCACCATGTTTGCCACTGGCCCTGAAGTGTAGCCTCAGAAGGTGCA
rJMSF029K22+          TTTCCGCGGCCTCATCACCATGTTTGCCACTGGCCCTGAAGTGTAGCCTCAGAAGGTGCA
JMFN011N15-           TTTCCGCGGCCTCATCACCATGTTTGCCACTGGCCCTGAAGTGTAGCCTCAGAAGGTGCA
                      ____________________________________________________________
consensus             TTTCCGCGGCCTCATCACCATGTTTGCCACTGGCCCTGAAGTGTAGCCTCAGAAGGTGCA
 
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rJMSF049M12+          TATATGTTTTCTTCTTCTTTTGCAGCAAATATTATCCTGTTCTTGAAATGGATCCTCAGA
rJMSF029K22+          TATATGTTTTCTTCTTCTTTTGCAGCAAATATTATCCTGTTCTTGAAATGGATCCTCAGA
JMFN011N15-           TATATGTTTTCTTCTTCTTTTGCAGCAAATATTATCCTGTTCTTGAAATAGATCCTCAGA
                      ____________________________________________________________
consensus             TATATGTTTTCTTCTTCTTTTGCAGCAAATATTATCCTGTTCTTGAAATGGATCCTCAGA
 
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rJMSF049M12+          TTTGTATAGCAATTACTAAAATCCTCTCTCCTTGCTGCCACCTCCTCCCCCCATGTAATG
rJMSF029K22+          TTTGTATAGCAATTACTAAAATCCTCTCTCCTTGCTGCCACCTCCTCCCCCCATGTAATG
JMFN011N15-           TTTGTATAGCAATTACTAAAATCCTCTCTCCTTGCTGCCACCTCCTCCCCCCATGTAATG
                      ____________________________________________________________
consensus             TTTGTATAGCAATTACTAAAATCCTCTCTCCTTGCTGCCACCTCCTCCCCCCATGTAATG
 
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rJMSF049M12+          TATACCATTTTGATAAATTGTTGGTCAGAT                              
rJMSF029K22+          TATACCATTTTGATAAATTGTTGGTCAGAT                              
JMFN011N15-           TATACCATTTTGATAAATTGTTGGTCAGATTAGAATTTTGCAATCAATATGATCTTTGCT
                      ____________________________________________________________
consensus             TATACCATTTTGATAAATTGTTGGTCAGATTAGAATTTTGCAATCAATATGATCTTTGCT
 
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JMFN011N15-           TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 
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JMFN011N15-           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCC
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCC
 
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JMFN011N15-           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAACAAACCCCGGGGGGGGG
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAACAAACCCCGGGGGGGGG