Contig 000317:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+                                                                      A
JMFN011G15+                                                                   GGGA
                      ____________________________________________________________
consensus                                                                     GGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           GGGAGTTGTCGAGCTTCCACATCGCCGCCTTCCCCTACCATTCTTGCCGGCTTTTCTCTG
JMFN011G15+           GGGAGTTGTCGAGCTTCCACATCGCCGCCTTCCCCTACCATTCTTGCCGGCTTTTCTCTG
                      ____________________________________________________________
consensus             GGGAGTTGTCGAGCTTCCACATCGCCGCCTTCCCCTACCATTCTTGCCGGCTTTTCTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           TGACATTCTTGATTGCCAAGAGGAACCCGTGGTTTTCAGTAGCTCTTCGAATGTCAGAAT
JMFN011G15+           TGACATTCTTGATTGCCAAGAGGAACCCGTGGTTTTCAGTAGCTCTTCGAATGTCAGAAT
                      ____________________________________________________________
consensus             TGACATTCTTGATTGCCAAGAGGAACCCGTGGTTTTCAGTAGCTCTTCGAATGTCAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           GTCCTCGCTCACCTCGTGCCTAGAGAGGGAGACCAGACTCGGGAGAACGTCCCTTTGGAA
JMFN011G15+           GTCCTCGCTCACCTCGTGCCTAGAGAGGGAGACCAGACTCGGGAGAACGTTCCTTTGGAA
                      ____________________________________________________________
consensus             GTCCTCGCTCACCTCGTGCCTAGAGAGGGAGACCAGACTCGGGAGAACGTTCCTTTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           GTCTCGTCTCTGCCTGCCTCTCCTTGCTTGCCCTCTCCGAGGGCGTTTTGGTGTTGTGGC
JMFN011G15+           GTCTCGTCTCTGCCTGCCTCTCCTTGCTTGCCCTCTCCGAGGGCGTTTTGGTGTTGTGGC
                      ____________________________________________________________
consensus             GTCTCGTCTCTGCCTGCCTCTCCTTGCTTGCCCTCTCCGAGGGCGTTTTGGTGTTGTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           AGCTCCTGATTCTTCTTCTTCGTCGTAGTTGATTTCCAAAATCGATGGCTCGTAACAGCT
JMFN011G15+           AGCTCCTGATTCTTCTTCTTCGTCGTAGTTGATTTCCAAAATCGATGGCTCGTAACAGCT
                      ____________________________________________________________
consensus             AGCTCCTGATTCTTCTTCTTCGTCGTAGTTGATTTCCAAAATCGATGGCTCGTAACAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           GCCTTCTTCCTTCATGTCTCTCAACTCGAGCGTCATAGCCTCGAAATAATCCAAGCCATC
JMFN011G15+           GCCTTCTTCCTTCATGTCTCTCAACTCGAGCGTCATAGCCTCGAAATAATCCAAGCCATC
                      ____________________________________________________________
consensus             GCCTTCTTCCTTCATGTCTCTCAACTCGAGCGTCATAGCCTCGAAATAATCCAAGCCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           GGGGATGGATTCTTCAACGGGTTCGCCTTTTCCCGACGAAGCATCCGTGATATTGCGCTC
JMFN011G15+           GGGGATGGATTCTTCAACGGGTTCGCCTTTTCCCGACGAAGCATCCGTGATATTGCGCTC
                      ____________________________________________________________
consensus             GGGGATGGATTCTTCAACGGGTTCGCCTTTTCCCGACGAAGCATCCGTGATATTGCGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           ACGACCATCGTTAACTCGAGAATAAATCACGTCCGCTAACCATTTGAGGCAATCGCTAGA
JMFN011G15+           ACGACCATCGTTAACTCGAGAATAAATCACGTCCGCTAACCATTTGAGGCAATCGCTAGA
                      ____________________________________________________________
consensus             ACGACCATCGTTAACTCGAGAATAAATCACGTCCGCTAACCATTTGAGGCAATCGCTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           TGCAGTTTCGTTCGGCAGATTGTTAGCACTCGACGATGAGATGGAGACTATAGCCTCGGC
JMFN011G15+           TGCAGTTTCGTTCGGCAGATTGTTAGCACTCGACGATGAGATGGAGACTATAGCCTCGGC
                      ____________________________________________________________
consensus             TGCAGTTTCGTTCGGCAGATTGTTAGCACTCGACGATGAGATGGAGACTATAGCCTCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025B23+           AGCTCCCCTCGTGACTTCTTCAAGAGGTTGCGTAGATTTCTCGACTCTCAACTCAACACT
JMFN011G15+           AGCTCCCCTCGTGACTTCTTCAAGAGGTTGCGTAGATTTCTCGACTCTCAACTCAACACT
                      ____________________________________________________________
consensus             AGCTCCCCTCGTGACTTCTTCAAGAGGTTGCGTAGATTTCTCGACTCTCAACTCAACACT