Contig 000314:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008E03Sequence627000314 (3)gb|AAK51235.1|AF287471_18e-28polyprotein [Arabidopsis thaliana]
JMFN028F13Sequence533000314 (3)emb|CAE05450.3|8e-08OSJNBa0073E02.10 [Oryza sativa Japonica Group]
JMFN031A04Sequence589000314 (3)gb|AAK51235.1|AF287471_11e-27polyprotein [Arabidopsis thaliana]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN031A04+ ATAAACATCTGATTTAC
JMFN008E03+ TCAAAGCTTTTATAAACATCTGATTTTA
                      ____________________________________________________________
consensus TCAAAGCTTTTATAAACATCTGATTTTC
 
. : . : . : . : . : . :
JMFN031A04+ CCCGTAACGGATAAAACCAAAAGAACCGAGAATACTCGTCTACAAAAAGTAAGAAGTAGC
JMFN028F13+ GC
JMFN008E03+ CCCGTAACGGATAAAACCAAAAGAACCGAGAATACTCGTCTACAAAAAGTAAGAAGTAGC
                      ____________________________________________________________
consensus CCCGTAACGGATAAAACCAAAAGAACCGAGAATACTCGTCTACAAAAAGTAAGAAGTAGC
 
. : . : . : . : . : . :
JMFN031A04+ GATGACCACTAGTGGAAACTACCGG-AGCCGGGCCCCATACATCGGTGAAAATTAAATCT
JMFN028F13+ GATGACCACTAGTGAAAACTACCGGAAGCCGGGCCCCATACATCGGT-AAAATTAGATCT
JMFN008E03+ GATGACCACTAGTGGAAACTACCGG-AGCCGGGCCCCATACATCGGTGAAAATTAAATCT
                      ____________________________________________________________
consensus GATGACCACTAGTGGAAACTACCGG-AGCCGGGCCCCATACATCGGTGAAAATTAAATCT
 
. : . : . : . : . : . :
JMFN031A04+ AAAACATTGATGCTAGATTTATGAATTCTATCTAATTTAAACCGGGACGACTTGCCGCGG
JMFN028F13+ AAAACATTGATGCTAGATTTATGAATTCTATTTAATTTAAACCGGGACGACTTGCCGCGG
JMFN008E03+ AAAACATTGATGCTAGATTTATGAATTCTATCTAATTTAAACCGGGACGACTTGCCGCGG
                      ____________________________________________________________
consensus AAAACATTGATGCTAGATTTATGAATTCTATCTAATTTAAACCGGGACGACTTGCCGCGG
 
. : . : . : . : . : . :
JMFN031A04+ TGACAAGCCGGGCACGACTCCGAGGACTTTGATTTATTTGGTGAAACTGGACAGTCTTTT
JMFN028F13+ TAACAAGCCGGGCACGACTCCGAGGACTTTGATTTATTTGGTGAAACTGGACAGTCTTTT
JMFN008E03+ TGACAAGCCGGGCACGACTCCGAGGACTTTGATTTATTTGGTGAAACTGGACAGTCTTTT
                      ____________________________________________________________
consensus TGACAAGCCGGGCACGACTCCGAGGACTTTGATTTATTTGGTGAAACTGGACAGTCTTTT
 
. : . : . : . : . : . :
JMFN031A04+ AGGATGCGGTTCTGGACAACACTGTGCAGGTGACCCAACCTTCGATGCCAAACGTCTTGT
JMFN028F13+ AGGATGCGGTTCTGGACAACACTGTGCAGGTGACCCAACCTTCGATGCCAAACGTGTTGT
JMFN008E03+ AGGATGCGGTTCTGGACAACACTGTGCAGGTGACCCAACCTTCGATGCCAAACGTCTTGT
                      ____________________________________________________________
consensus AGGATGCGGTTCTGGACAACACTGTGCAGGTGACCCAACCTTCGATGCCAAACGTCTTGT
 
. : . : . : . : . : . :
JMFN031A04+ GTGGCACGGGAACTGACGAACGCAAACTGTGTGTTTGACAACGGAAGCTTGTATAGTCCC
JMFN028F13+ GTGGCACGGGAACTGACGAACGCAAACTGTGTGTTTGACAACGGAAGCTTGTATAGTCCC
JMFN008E03+ GTGGCACGGGAACTGACGAACGCAAACTGTGTGTTTGACAACGGAAGCTTGTATAGTCCC
                      ____________________________________________________________
consensus GTGGCACGGGAACTGACGAACGCAAACTGTGTGTTTGACAACGGAAGCTTGTATAGTCCC
 
. : . : . : . : . : . :
JMFN031A04+ CCTGATGTTGGCCCCTTAAGCAGAATGACCCTGGTTTTGGAATCCTGTACGTTCTAAGGG
JMFN028F13+ CCTGATGTTGGCCCCTTAAGCAGAATGACCCTGGTTTTGGAATCCTGTACGTTGTAAGGG
JMFN008E03+ CCTGATGTTGGCCCCTTAAGCAGAATGACCCTGGTTTTGGAATCCTGTACGTTCTAAGGG
                      ____________________________________________________________
consensus CCTGATGTTGGCCCCTTAAGCAGAATGACCCTGGTTTTGGAATCCTGTACGTTCTAAGGG
 
. : . : . : . : . : . :
JMFN031A04+ GGTTACGTCAAGACTTGCGGATCATGGCAGCTTCGCTCACCGCCACCAACAATTCCATCT
JMFN028F13+ GGTTACGTCAAGACTTGCGGATCATGGCAGCTTCGCTCACCGCCACCAACAATTCCATCT
JMFN008E03+ GGTTACGTCAAGACTTGCGGATCATGGCAGCTTCGCTCACCGCCACCAACAATTCCATCT
                      ____________________________________________________________
consensus GGTTACGTCAAGACTTGCGGATCATGGCAGCTTCGCTCACCGCCACCAACAATTCCATCT
 
. : . : . : . : . : . :
JMFN031A04+ CACTGTCGTAGCTCGCTGATTTCTTGCAGGCCCAAGAATTCATCATCTAATGTTTTAAAA
JMFN028F13+ CACTGTCGTAGCTCGGTGATTTCTTGCAGGCCCAAGAATTCATCATCTAATGTTTTAAAA
JMFN008E03+ CACTGTCGTAGCTCGCTGATTTCTTGCAGGCCCAAGAATTCATCATCTAATGTTTTAAAA
                      ____________________________________________________________
consensus CACTGTCGTAGCTCGCTGATTTCTTGCAGGCCCAAGAATTCATCATCTAATGTTTTAAAA
 
. : . : . : . : . : . :
JMFN031A04+ TCTAAATCTGGACTTTGTCTTATGGCGTTGTTG
JMFN028F13+ TCTAAATCTGGACTTTGTCTTATGGCGTTGTTGACCTCCATGTTCTTCCAC
JMFN008E03+ TCTAAATCTGGACTTTGTCTTATGGCGTTGTTGACCTCCATGTTCTTCCACCTGCAATAA
                      ____________________________________________________________
consensus TCTAAATCTGGACTTTGTCTTATGGCGTTGTTGACCTCCATGTTCTTCCACCTGCAATAA