Contig 000314:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008E03Sequence627000314 (3)gb|AAK51235.1|AF287471_18e-28polyprotein [Arabidopsis thaliana]
JMFN028F13Sequence533000314 (3)emb|CAE05450.3|8e-08OSJNBa0073E02.10 [Oryza sativa Japonica Group]
JMFN031A04Sequence589000314 (3)gb|AAK51235.1|AF287471_11e-27polyprotein [Arabidopsis thaliana]

Alignment

This contig is upended


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JMFN031A04+                                                      ATAAACATCTGATTTAC
JMFN008E03+                                           TCAAAGCTTTTATAAACATCTGATTTTA
                      ____________________________________________________________
consensus                                             TCAAAGCTTTTATAAACATCTGATTTTC
 
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JMFN031A04+           CCCGTAACGGATAAAACCAAAAGAACCGAGAATACTCGTCTACAAAAAGTAAGAAGTAGC
JMFN028F13+                                                                     GC
JMFN008E03+           CCCGTAACGGATAAAACCAAAAGAACCGAGAATACTCGTCTACAAAAAGTAAGAAGTAGC
                      ____________________________________________________________
consensus             CCCGTAACGGATAAAACCAAAAGAACCGAGAATACTCGTCTACAAAAAGTAAGAAGTAGC
 
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JMFN031A04+           GATGACCACTAGTGGAAACTACCGG-AGCCGGGCCCCATACATCGGTGAAAATTAAATCT
JMFN028F13+           GATGACCACTAGTGAAAACTACCGGAAGCCGGGCCCCATACATCGGT-AAAATTAGATCT
JMFN008E03+           GATGACCACTAGTGGAAACTACCGG-AGCCGGGCCCCATACATCGGTGAAAATTAAATCT
                      ____________________________________________________________
consensus             GATGACCACTAGTGGAAACTACCGG-AGCCGGGCCCCATACATCGGTGAAAATTAAATCT
 
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JMFN031A04+           AAAACATTGATGCTAGATTTATGAATTCTATCTAATTTAAACCGGGACGACTTGCCGCGG
JMFN028F13+           AAAACATTGATGCTAGATTTATGAATTCTATTTAATTTAAACCGGGACGACTTGCCGCGG
JMFN008E03+           AAAACATTGATGCTAGATTTATGAATTCTATCTAATTTAAACCGGGACGACTTGCCGCGG
                      ____________________________________________________________
consensus             AAAACATTGATGCTAGATTTATGAATTCTATCTAATTTAAACCGGGACGACTTGCCGCGG
 
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JMFN031A04+           TGACAAGCCGGGCACGACTCCGAGGACTTTGATTTATTTGGTGAAACTGGACAGTCTTTT
JMFN028F13+           TAACAAGCCGGGCACGACTCCGAGGACTTTGATTTATTTGGTGAAACTGGACAGTCTTTT
JMFN008E03+           TGACAAGCCGGGCACGACTCCGAGGACTTTGATTTATTTGGTGAAACTGGACAGTCTTTT
                      ____________________________________________________________
consensus             TGACAAGCCGGGCACGACTCCGAGGACTTTGATTTATTTGGTGAAACTGGACAGTCTTTT
 
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JMFN031A04+           AGGATGCGGTTCTGGACAACACTGTGCAGGTGACCCAACCTTCGATGCCAAACGTCTTGT
JMFN028F13+           AGGATGCGGTTCTGGACAACACTGTGCAGGTGACCCAACCTTCGATGCCAAACGTGTTGT
JMFN008E03+           AGGATGCGGTTCTGGACAACACTGTGCAGGTGACCCAACCTTCGATGCCAAACGTCTTGT
                      ____________________________________________________________
consensus             AGGATGCGGTTCTGGACAACACTGTGCAGGTGACCCAACCTTCGATGCCAAACGTCTTGT
 
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JMFN031A04+           GTGGCACGGGAACTGACGAACGCAAACTGTGTGTTTGACAACGGAAGCTTGTATAGTCCC
JMFN028F13+           GTGGCACGGGAACTGACGAACGCAAACTGTGTGTTTGACAACGGAAGCTTGTATAGTCCC
JMFN008E03+           GTGGCACGGGAACTGACGAACGCAAACTGTGTGTTTGACAACGGAAGCTTGTATAGTCCC
                      ____________________________________________________________
consensus             GTGGCACGGGAACTGACGAACGCAAACTGTGTGTTTGACAACGGAAGCTTGTATAGTCCC
 
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JMFN031A04+           CCTGATGTTGGCCCCTTAAGCAGAATGACCCTGGTTTTGGAATCCTGTACGTTCTAAGGG
JMFN028F13+           CCTGATGTTGGCCCCTTAAGCAGAATGACCCTGGTTTTGGAATCCTGTACGTTGTAAGGG
JMFN008E03+           CCTGATGTTGGCCCCTTAAGCAGAATGACCCTGGTTTTGGAATCCTGTACGTTCTAAGGG
                      ____________________________________________________________
consensus             CCTGATGTTGGCCCCTTAAGCAGAATGACCCTGGTTTTGGAATCCTGTACGTTCTAAGGG
 
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JMFN031A04+           GGTTACGTCAAGACTTGCGGATCATGGCAGCTTCGCTCACCGCCACCAACAATTCCATCT
JMFN028F13+           GGTTACGTCAAGACTTGCGGATCATGGCAGCTTCGCTCACCGCCACCAACAATTCCATCT
JMFN008E03+           GGTTACGTCAAGACTTGCGGATCATGGCAGCTTCGCTCACCGCCACCAACAATTCCATCT
                      ____________________________________________________________
consensus             GGTTACGTCAAGACTTGCGGATCATGGCAGCTTCGCTCACCGCCACCAACAATTCCATCT
 
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JMFN031A04+           CACTGTCGTAGCTCGCTGATTTCTTGCAGGCCCAAGAATTCATCATCTAATGTTTTAAAA
JMFN028F13+           CACTGTCGTAGCTCGGTGATTTCTTGCAGGCCCAAGAATTCATCATCTAATGTTTTAAAA
JMFN008E03+           CACTGTCGTAGCTCGCTGATTTCTTGCAGGCCCAAGAATTCATCATCTAATGTTTTAAAA
                      ____________________________________________________________
consensus             CACTGTCGTAGCTCGCTGATTTCTTGCAGGCCCAAGAATTCATCATCTAATGTTTTAAAA
 
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JMFN031A04+           TCTAAATCTGGACTTTGTCTTATGGCGTTGTTG                           
JMFN028F13+           TCTAAATCTGGACTTTGTCTTATGGCGTTGTTGACCTCCATGTTCTTCCAC         
JMFN008E03+           TCTAAATCTGGACTTTGTCTTATGGCGTTGTTGACCTCCATGTTCTTCCACCTGCAATAA
                      ____________________________________________________________
consensus             TCTAAATCTGGACTTTGTCTTATGGCGTTGTTGACCTCCATGTTCTTCCACCTGCAATAA