| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039A21 | Sequence | 612 | 000310 (11) | emb|CDP03299.1| | 2e-55 | unnamed protein product [Coffea canephora] | |||||
| JMFF040D07 | Sequence | 517 | 000310 (11) | emb|CDP03299.1| | 5e-33 | unnamed protein product [Coffea canephora] | 674 | 000310 (11) | emb|CDP03299.1| | 5e-65 | unnamed protein product [Coffea canephora] |
| JMFF049A10 | Sequence | 396 | 000310 (11) | emb|CDP03299.1| | 2e-33 | unnamed protein product [Coffea canephora] | |||||
| JMFN007A04 | Sequence | 448 | 000310 (11) | emb|CDP03299.1| | 9e-32 | unnamed protein product [Coffea canephora] | |||||
| JMFN009A18 | Sequence | 652 | 000310 (11) | emb|CDP03299.1| | 9e-73 | unnamed protein product [Coffea canephora] | |||||
| JMFN038M22 | Sequence | 608 | 000310 (11) | emb|CDP03299.1| | 8e-61 | unnamed protein product [Coffea canephora] | |||||
| JMSF005P03 | Sequence | 275 | 000310 (11) | emb|CDP03299.1| | 2e-06 | unnamed protein product [Coffea canephora] | 382 | 000310 (11) | emb|CDP03299.1| | 4e-12 | unnamed protein product [Coffea canephora] |
| JMSF023N14 | Sequence | 677 | 000310 (11) | emb|CDP03299.1| | 4e-51 | unnamed protein product [Coffea canephora] | 775 | 000310 (11) | ref|XP_009380572.1| | 4e-89 | PREDICTED: auxin-responsive protein IAA21-like isoform X2 [Musa acuminata subsp |
This contig is upended
. : . : . : . : . : . :
rJMFF039A21- AGAGTTACAGAAGTAAGGCATAATATCAC
rJMSF005P03- AAGTAAGGCGTAATATCAC
rJMFF040D07- ATTGTGCCTTTTTGTGGCAGAACAACAAGGAGAGTTACAGAAGTAAGGCATAATATCAC
rJMSF023N14- ACAAGGAGAGTTACAGAAGTAAGGCATAATATCAC
____________________________________________________________
consensus ATTGTGCCTTTTTGTGGCAGAACAACAAGGAGAGTTACAGAAGTAAGGCATAATATCAC
. : . : . : . : . : . :
rJMFF039A21- TGATTTACAATGTATAATACTAATAATAGTAGTGTCCAGTCCACTTACCAAAGAAATAAG
rJMSF005P03- TGATTTACAATGTATAATACTAATAATAGTAGTGTCCAGTCCACTTACCAAAGAAATAAG
rJMFF040D07- TGATTTACAATGTATAATACTAATAATAGTAGTGTCCAGTCCACTTACCAAAGAAATAAG
rJMSF023N14- TGATTTACAATGTATAATACTAATAATAGTAGTGTCCAGTCCACTTACCAAAGAAATAAG
____________________________________________________________
consensus TGATTTACAATGTATAATACTAATAATAGTAGTGTCCAGTCCACTTACCAAAGAAATAAG
. : . : . : . : . : . :
rJMFF039A21- AATACAGGAAAATAAACACAGCAATTAAAGCCTATAAAGAGCTTAGAATAATTATGAATA
rJMSF005P03- AATACAGGAAAATAAACACAGCAATTAAAGCCTATAAAGAGCTTAGAATAATTATGAATA
rJMFF040D07- AATACAGGAAAATAAACACAGCAATTAAAGCCTATAAAGAGCTTAGAATAATTATGAATA
rJMSF023N14- AATACAGGAAAATAAACACAGCAATTAAAGCCTATAAAGAGCTTAGAATAATTATGAATA
____________________________________________________________
consensus AATACAGGAAAATAAACACAGCAATTAAAGCCTATAAAGAGCTTAGAATAATTATGAATA
. : . : . : . : . : . :
rJMFF039A21- CATCTATTTATTAGTTCACTAGAATTTTGTTTTGGGCACAGACAAAACACCAGGTGGATG
rJMSF005P03- CATCTATTTATTAGTTCACTAGAATTTTGTTTTGGGCACAGACAAAACACCAGGTGGATG
rJMFF040D07- CATCTATTTATTAGTTCACTAGAATTTTGTTTTGGGCACAGACAAAACACCAGGTGGATG
rJMSF023N14- CATCTATTTATTAGTTCACTAGAATTTTGTTTTGGGCACAGACAAAACACCAGGTGGATG
____________________________________________________________
consensus CATCTATTTATTAGTTCACTAGAATTTTGTTTTGGGCACAGACAAAACACCAGGTGGATG
. : . : . : . : . : . :
rJMFF039A21- GTTGACTTGATATGCAGATGATCAAGCATCCATTTTATGATCTCAGTTTGCTTGCACTCA
rJMSF005P03- GTTGACTTGATATGCAGATGATCAAGCATCCATTTTATGATCTCAGTTTGCTTGCACTCA
rJMFF040D07- GTTGACTTGATATGCAGATGATCAAGCATCCATTTTATGATCTCAGTTTGCTTGCACTCA
rJMSF023N14- GTTGACTTGATATGCAGATGATCAAGCATCCATTTTATGATCTCAGTTTGCTTGCACTCA
____________________________________________________________
consensus GTTGACTTGATATGCAGATGATCAAGCATCCATTTTATGATCTCAGTTTGCTTGCACTCA
. : . : . : . : . : . :
rJMFF039A21- GATCGACCACTTCATCTCTAGCGGTTTTTGCACTTCTCCATGGCTCGAGGAGCTAGGCCG
rJMSF005P03- GATCGACCACTTCATCTCTAGCGGTTTTTGCACTTCTCCATGGCTCGAGGAGCTAGGCCG
rJMFF040D07- GATCGACCACTTCATCTCTAGCGGTTTTTGCACTTCTCCATGGCTCGAGGAGCTAGGCCG
rJMSF023N14- GATCGACCACTTCATCTCTAGCGGTTTTTGCACTTCTCCATGGCTCGAGGAGCTAGGCCG
____________________________________________________________
consensus GATCGACCACTTCATCTCTAGCGGTTTTTGCACTTCTCCATGGCTCGAGGAGCTAGGCCG
. : . : . : . : . : . :
rJMFF039A21- ATTGCATCTGAACTTTTTGTGATCCTTAGGCGCTTGCAAGCATCCACGAACATCTCCCAT
rJMSF005P03- ATTGCATCTGAACTTTTTGTGATCCTTAGGCGCTTGCAAGCATCCACGAACATCTCCCAT
rJMFF040D07- ATTGCATCTGAACTTTTTGTGATCCTTAGGCGCTTGCAAGCATCCACGAACATCTCCCAT
rJMSF023N14- ATTGCATCTGAACTTTTTGTGATCCTTAGGCGCTTGCAAGCATCCACGAACATCTCCCAT
____________________________________________________________
consensus ATTGCATCTGAACTTTTTGTGATCCTTAGGCGCTTGCAAGCATCCACGAACATCTCCCAT
. : . : . : . : . : . :
rJMFF039A21- GGGAGATCGCCAACGAGCATCCAATCACCATCCTTGTCTTCGAAGGTAAGAACATATTCT
rJMSF005P03- GGG
rJMFF040D07- GGGAGATCGCCAACGAGCATCCAATCACCATCCTTGTCTTCGAAGGTAAGAACATATTCT
rJMSF023N14- GGGAGATCGCCAACGAGCATCCAATCACCATCCTTGTCTTCGAAGGTAAGAACATATTCT
____________________________________________________________
consensus GGGAGATCGCCAACGAGCATCCAATCACCATCCTTGTCTTCGAAGGTAAGAACATATTCT
. : . : . : . : . : . :
rJMFF039A21- GAACCATGTAGAATATCCATCAATCTACTTTCGCTCAAACCATCATGGACAGAAATGCCT
rJMFF040D07- GAACCATGTAGAATATCCATCAATCTACTTTCGCTCAAACCATCATGGACAGAAATGCCT
rJMSF023N14- GAACCATGTAGAATATCCATCAATCTACTTTCGCTCAAACCATCATGGACAGAAATGCCT
____________________________________________________________
consensus GAACCATGTAGAATATCCATCAATCTACTTTCGCTCAAACCATCATGGACAGAAATGCCT
. : . : . : . : . : . :
rJMFF039A21- TGTGTTTCATATTGACCAATTGTAAAGCAGCTGAACATTTTCTCCAGGGCCACAGACAGA
rJMFF040D07- TGTGTTTCATATTGACCAATTGTAAAGCAGCTGAACATTTTCTCCAGGGCCACAGACAGA
rJMSF023N14- TGTGTTTCATATTGACCAATTGTAAAGCAGCTGAACATTTTCTCCAGGGCCACAGACAGA
JMFN009A18+ GTTTCATATTGACCAATTGTAAAGCAGCTGAACA-TTTCTCCAGGGCCACAGACAGA
____________________________________________________________
consensus TGTGTTTCATATTGACCAATTGTAAAGCAGCTGAACATTTTCTCCAGGGCCACAGACAGA
. : . : . : . : . : . :
rJMFF039A21- TCCTTATAGCTGTTATAGTTCTTGAGGNCNACTTTCCTCAAGT
rJMFF040D07- TCCTTATAGCTGTTATAGTTCTTGAGGTCGACTTTCCTCAAGTAAGGGGCGCCATCCATG
rJMSF023N14- TCCTTATAGCTGTTATAGTTCTTGAGGTCGACTTTCCTCAAGTAAGGGGCGCCATCCATG
JMFN009A18+ TCCTTATAGCTGTTATAGTTCTTGAGGTCGACTTTCCTCAAGTAAGGGGCGCCATCCATG
____________________________________________________________
consensus TCCTTATAGCTGTTATAGTTCTTGAGGTCGACTTTCCTCAAGTAAGGGGCGCCATCCATG
. : . : . : . : . : . :
rJMFF040D07- CTGACTTTGACATAG
rJMSF023N14- CTGACTTTGACATAGACACAACTTAATCCCAAGTTTCCATTTGAATCTTCCTTGGTCTTG
JMFN009A18+ CTGACTTTGACATAGACACAACTTAATCCCAAGTTTCCATTTGAATCTTCCTTGGTCTTG
JMFN038M22+ GACATAGACACAACTTAATCCCAAGTTTCCATTGGAATCTTCCTTGGTCTTG
____________________________________________________________
consensus CTGACTTTGACATAGACACAACTTAATCCCAAGTTTCCATTTGAATCTTCCTTGGTCTTG
. : . : . : . : . : . :
rJMSF023N14- GGAGGATTAGCAGCCATTGAATTCTTCCGATATGATCGAATTGGGGGCCATCCAACCACC
JMFN009A18+ GGAGGATTAGCAGCCATTGAATTCTTCCGATATGATCGAATTGGGGGCCATCCAACCACC
JMSF023N14+ GAGGATTAGCAGCCATTGAATTCTTCCGATATGATCGAATTGGGGGCCATCCAACCACC
JMFN038M22+ GGAGGATTAGCAGCCATTGAATTCTTCCGATATGATCGAATTGGGGGCCATCCAACCACC
____________________________________________________________
consensus GGAGGATTAGCAGCCATTGAATTCTTCCGATATGATCGAATTGGGGGCCATCCAACCACC
. : . : . : . : . : . :
rJMSF023N14- TGGGCCTTTGCAGCAGG
JMFN009A18+ TGGGCCTTTGCAGCAGGAGCAACCCCATGGTTAGGTGCAGAAGAAAGCTGAGGCTTTTGG
JMSF023N14+ TGGGCCTTTGCAGCAGGAGCAACCCCATGGTTAGGTGCAGAAGAAAGCTGAGGCTTTTGG
JMFN038M22+ TGGGCCTTTGCAGCAGGAGCAACCCCATGGTTAGGTGCAGAAGAAAGCTGAGGCTTTTGG
____________________________________________________________
consensus TGGGCCTTTGCAGCAGGAGCAACCCCATGGTTAGGTGCAGAAGAAAGCTGAGGCTTTTGG
. : . : . : . : . : . :
JMFN009A18+ TCTTGAGTTGGGGTTGGGGATGGCAGAGAAGATTCTTTGGAAGCCACGTCAGACTGGTGG
JMSF023N14+ TCTTGAGTTGGGGTTGGGGATGGCAGAGAAGATTCTTTGGAAGCCACGTCAGACTGGTGG
JMFF049A10+ TTTGGAAGCCACGTCAGACTGGTGG
JMFF040D07+ CCACGTCAGACTGGTGG
JMFN038M22+ TCTTGAGTTGGGGTTGGGGATGGCAGAGAAGATTCTTTGGAAGCCACGTCAGACTGGTGG
____________________________________________________________
consensus TCTTGAGTTGGGGTTGGGGATGGCAGAGAAGATTCTTTGGAAGCCACGTCAGACTGGTGG
. : . : . : . : . : . :
JMFN009A18+ GTGGTATTCTCTGCAGGGCAAAGAATCTTGGCAGCACCATTGACACCCCTAGGAGAGAAC
JMSF023N14+ GTGGTATTCTCTGCAGGGCAAAGAATCTTGGCAGCACCATTGACACCCCTAGGAGAGAGC
JMFF049A10+ GTGGTATTCTCTGCAGGGCAAAGAATCTTGGCAGCACCATTGACACCCCTAGGAGAGAAC
JMFF040D07+ GTGGTATTCTCTGCAGGGCAAAGAATCTTGGCAGCACCATTGACACCCCTAGGAGAGAAC
JMFN038M22+ GTGGTATTCTCTGCAGGGCAAAGAATCTTGGCAGCACCATTGACACCCCTAGGAGAGAAC
JMFN007A04+ AGCACCATTGACACCCCTAGGAGAGAAC
____________________________________________________________
consensus GTGGTATTCTCTGCAGGGCAAAGAATCTTGGCAGCACCATTGACACCCCTAGGAGAGAAC
. : . : . : . : . : . :
JMFN009A18+ AAGGCAGCACCTTTGGGGATATCAGCCTCAGATCCACCACTCCCAGGGAAAACCCACTTC
JMSF023N14+ AAGGCAGCACCTTTGGGGATATCAGCCTCAGATCCACCACTCCCAGGGAAAACCCACTTC
JMFF049A10+ AAGGCAGCACCTTTGGGGATATCAGCCTCAGATCCACCACTCCCAGGGAAAACCCACTTC
JMFF040D07+ AAGGCAGCACCTTTGGGGATATCAGCCTCAGATCCACCACTCCCAGGGAAAACCCACTTC
JMFN038M22+ AAGGCAGCACCTTTGGGGATATCAGCCTCAGATCCACCACTCCCAGGGAAAACCCACTTC
JMFN007A04+ AAGGCAGCACCTTTGGGGATATCAGCCTCAGATCCACCACTCCCAGGGAAAACCCACTTC
____________________________________________________________
consensus AAGGCAGCACCTTTGGGGATATCAGCCTCAGATCCACCACTCCCAGGGAAAACCCACTTC
. : . : . : . : . : . :
JMFN009A18+ CCAGAACCACCATTGATGGTGTCTGAGAAGCCCCTCTTGGCCCTCAAAACACCCACTGGC
JMSF023N14+ CCAGAACCACCATTGATGGTGTCTGAGAAGCCCCTCTTGGCCCTCAAAACACCCACTGGC
JMFF049A10+ CCAGAACCACCATTGATGGTGTCTGAGAAGCCCCTCTTGGCCCTCAAAACACCCACTGGC
JMFF040D07+ CCAGAACCACCATTGATGGTGTCTGAGAAGCCCCTCTTGGCCCTCAAAACACCCACTGGC
JMFN038M22+ CCAGAACCACCATTGATGGTGTCTGAGAAGCCCCTCTTGGCCCTCAAAACACCCACTGGC
JMFN007A04+ CCAGAACCACCATTGATGGTGTCTGAGAAGCCCCTCTTGGCCCTCAAAACACCCACTGGC
____________________________________________________________
consensus CCAGAACCACCATTGATGGTGTCTGAGAAGCCCCTCTTGGCCCTCAAAACACCCACTGGC
. : . : . : . : . : . :
JMFN009A18+ CCATTATCCCTCTCTGGGGACTCAGAACCGGGCAACCCCAACCTCAGCTCAGTAGCCTTC
JMSF023N14+ CCATTATCCCTCTCTGGGGACTCAGAACCGGGCAACCCCAACCTCAGCTCAGTAGCCTTC
JMFF049A10+ CCATTATCCCTCTCTGGGGACTCAGAACCGGGCAACCCCAACCTCAGCTCAGTAGCCTTC
JMFF040D07+ CCATTATCCCTCTCTGGGGACTCAGAACCGGGCAACCCCAACCTCAGCTCAGTAGCCTTC
JMFN038M22+ CCATTATCCCTCTCTGGGGACTCAGAACCGGGCAACCCCAACCTCAGCTCAGTAGCCTTC
JMSF005P03+ CAGAACCGGGCAACCCCAACCTCAGCTCAGTAGCCTTC
JMFN007A04+ CCATTATCCCTCTCTGGGGACTCAGAACCGGGCAACCCCAACCTCAGCTCAGTAGCCTTC
____________________________________________________________
consensus CCATTATCCCTCTCTGGGGACTCAGAACCGGGCAACCCCAACCTCAGCTCAGTAGCCTTC
. : . : . : . : . : . :
JMFN009A18+ AAGTTCAAATCTTTGCCTTTCCTCTCACTCTCCACTGAGGAAACACAGCTCTTCTC
JMSF023N14+ AAGTTCAAATCTTTGCCTTTCCTCTCACTCTCCACTGAGGAAACACAGCTCTTCTCAGAG
JMFF049A10+ AAGTTCAAATCTTTGCCTTTCCTCTCACTCTCCACTGAGGAAACACAGCTCTTCTCAGAG
JMFF040D07+ AAGTTCAAATCTTTGCCTTTCCTCTCACTCTCCACTGAGGAAACACAGCTCTTCTCAGAG
JMFN038M22+ AAGTTCAAATCTTTGCCTTTCCTCTCACTCTCCACTGAGGAAACACAGCTCTTCTCAGAG
JMSF005P03+ AAGTTCAAATCTTTGCCTTTCCTCTCACTCTCCACTGAGGAAACACAGCTCTTCTCAGAG
JMFN007A04+ AAGTTCAAATCTTTGCCTTTCCTCTCACTCTCCACTGAGGAAACACAGCTCTTCTCAGAG
____________________________________________________________
consensus AAGTTCAAATCTTTGCCTTTCCTCTCACTCTCCACTGAGGAAACACAGCTCTTCTCAGAG
. : . : . : . : . : . :
JMSF023N14+ GTCTCCATTGAAGGGGACTCTGATAGGCCTATGTAATCATGCTCCTCTAAGGGTTTCGAC
JMFF049A10+ GTCTCCATTGAAGGGGACTCTGATAGGCCTATGTAATCATGCTCCTCTAAGGGTTTCGAC
JMFF040D07+ GTCTCCATTGAAGGGTACTCTGATAGGCCTATGTAATCATGCTCCTCTAAGGGTTTCGAC
JMFN038M22+ GTCTCCATTGAAGGGGACTCTGATAGGCCTATGTAATCATGCTCCTCTAAGGGTTTCGAC
JMSF005P03+ GTCTCCATTGAAGGGGACTCTGATAGGCCTATGTAATCATGCTCCTCTAAGGGTTTCGAC
JMFN007A04+ GTCTCCATTGAAGGGGACTCTGATAGGCCTATGTAATCATGCTCCTCTAAGGGTTTCGAC
____________________________________________________________
consensus GTCTCCATTGAAGGGGACTCTGATAGGCCTATGTAATCATGCTCCTCTAAGGGTTTCGAC
. : . : . : . : . : . :
JMSF023N14+ ATCAA
JMFF049A10+ ATCAAC
JMFF040D07+ ATCAA
JMFN038M22+ ATCAACTCCCAGAACA
JMSF005P03+ ATCAACTCCCAGAACACTATCACTCAGAAATGCAAATATGGAGCAATAGAAGTGAAGTGT
JMFN007A04+ ATCAACTCCCAGAACACTATCACTCAGAAATGCAAATATGGAGCAATAGAAGTGAAGTGT
____________________________________________________________
consensus ATCAACTCCCAGAACACTATCACTCAGAAATGCAAATATGGAGCAATAGAAGTGAAGTGT
. : . : . : . : . : . :
JMSF005P03+ GTGTTTTTAGCCAAACAAGAAGTACTATAGCAGAGTGTAAAATTCAAGAATACAGT
JMFN007A04+ GTGTTTTTAGCCAAACAAGAAGTACTATAGCAGAGTGTAAAATTCAAGAATACAGTGAGG
____________________________________________________________
consensus GTGTTTTTAGCCAAACAAGAAGTACTATAGCAGAGTGTAAAATTCAAGAATACAGTGAGG