Contig 000307:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMCP016C09+                                         AATTGCACAACAATTATTAACGAGAAAAG
rJMSF050J08-                                          ATTGCACAACAATTATTAACGAGAAAAG
                      ____________________________________________________________
consensus                                            AATTGCACAACAATTATTAACGAGAAAAG
 
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rJMCP016C09+          AAAAATAGAAAtacAAAAAGtTGAATATACATGTCGACAATCACGTATGcgaGACGTGAT
rJMSF050J08-          AAAAATAGAAAATGAAAAAGATGAATATACATGTCGACAATCACGTATGGCTGACGTGAT
                      ____________________________________________________________
consensus             AAAAATAGAAAATGAAAAAGATGAATATACATGTCGACAATCACGTATGGCTGACGTGAT
 
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rJMCP016C09+          ATCCgtgGATagaCTTTTTTGTTTTTTTGA-TTTTTTTTTTTAGCTCTCTCTCTCTCTCT
rJMSF050J08-          ATCCCACGATTCTCTTTTTTGTTTTTTTGATTTTTTTTTTTTAGCTCTCTCTCTCTCTCT
JMSF050J08+                                           TTTTTTTTTTAGCTCTCTCTCTCTCTCT
                      ____________________________________________________________
consensus             ATCCCACGATTCTCTTTTTTGTTTTTTTGATTTTTTTTTTTTAGCTCTCTCTCTCTCTCT
 
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rJMCP016C09+          CTCCTTAGACAtTTATCAAATATTATCATCGTCAACCCATTTTCCGGCGGAAAGGCGGCC
rJMSF050J08-          CTCCTTANACAATTATCAAATATTATCATCGTCAACCCATTTTCCGGNGNAAAGGNGGCC
JMSF050J08+           CTCCTTAGACAATTATCAAATATTATCATCGTCAACCCATTTTCCGGCGGAAAGGCGGCC
JMFN013N08+                                   ATCATCGTCAACCCATTTTCCGGCGGAAAGGCGGCC
                      ____________________________________________________________
consensus             CTCCTTAGACAATTATCAAATATTATCATCGTCAACCCATTTTCCGGCGGAAAGGCGGCC
 
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rJMCP016C09+          GGAATCGACCGACGGGCGAGATCATATCTTCTCCAGCTTCTCCGCCTTGATTAGAGGATT
rJMSF050J08-          GGAATCNACCGANGGGNGANATCATATCTTCNCCAGCTTCNCCNCCTTGATTAAAGGATN
JMSF050J08+           GGAATCGACCGACGGGCGAGATCATATCTTCTCCAGCTTCTCCGCCTTGATTAGAGGATT
JMFN013N08+           GGAATCGACCGACGGGCGAGATCATATCTTCTCCAGCTTCTCCGCCTTGATTAGAGGATT
                      ____________________________________________________________
consensus             GGAATCGACCGACGGGCGAGATCATATCTTCTCCAGCTTCTCCGCCTTGATTAGAGGATT
 
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rJMCP016C09+          GGCCa                                                       
rJMSF050J08-          GGCCTNGGCNANGGCTTCTCTGCCCANGGCCTTAAAATCNAACGAGCATCCGNGATTCNC
JMSF050J08+           GGCCTTGGCGATGGCTTCTCTGCCCAAGGCCTTAAAATCGAACGAGCATCCGTGATTCTC
JMFN013N08+           GGCCTTGGCGATGGCTTCTCTGCCCAAGGCCTTAAAATCGAACGAGCATCCGTGATTCTC
                      ____________________________________________________________
consensus             GGCCTTGGCGATGGCTTCTCTGCCCAAGGCCTTAAAATCGAACGAGCATCCGTGATTCTC
 
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rJMSF050J08-          GGGGTACCGGGGGACCCCNCANAAGGNGACCCCGCA-NGGCACCGGAATCCCGTCAACCC
JMSF050J08+           GGGGTACCGGTGGACCCCACAGAAGGTGACCCCGCA-CGGCACCGGAATCCCGTCAACCC
JMFN013N08+           GGGGTACCGGTGGACCCCACAGAAGGTGACCCCGCACCGGCACCGGAATCCCGTCAACCC
                      ____________________________________________________________
consensus             GGGGTACCGGTGGACCCCACAGAAGGTGACCCCGCA-CGGCACCGGAATCCCGTCAACCC
 
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rJMSF050J08-          AACCTTNTTCCGGNAAGCCNAGCACCGGTTCGTCNCCNGNNGGGGAAGNACCACCGCCGC
JMSF050J08+           AACCTTCTTCCGGCAAGCCGAGCACCGGTTCGTCGCCTGCTGCGGCAGCACCACCGCCGC
JMFN013N08+           AACCTTCTTCCGGCAAGCCGAGCACCGGTTCGTCGCCTGCTGCGGCAGCACCACCGCCGC
                      ____________________________________________________________
consensus             AACCTTCTTCCGGCAAGCCGAGCACCGGTTCGTCGCCTGCTGCGGCAGCACCACCGCCGC
 
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rJMSF050J08-          CGCCGCCTCCTCCACNTTATCNGCCGGGGCCGCCCTTCCCTTCAAATTCTCCGGC     
JMSF050J08+           CGCCGCCTCCTCCACCTTATCTGCCGCGGCCGCCCTTCCCTTCAAATTCTCCGGCGACGA
JMFN013N08+           CGCCGCCTCCTCCACCTTATCTGCCGCGGCCGCCCTTCCCTTCAAATTCTCCGGCGACGA
                      ____________________________________________________________
consensus             CGCCGCCTCCTCCACCTTATCTGCCGCGGCCGCCCTTCCCTTCAAATTCTCCGGCGACGA
 
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JMSF050J08+           AGCAGACGCCGGCGGCGCGGCGAACACGGAATCCACCGGAGCCTTGGGTTTGGATTGGGC
JMFN013N08+           AGCAGACGCCGGCGGCGCGGCGAACACGGAATCCACCGGAGCCTTGGGTTTGGATTGGGC
                      ____________________________________________________________
consensus             AGCAGACGCCGGCGGCGCGGCGAACACGGAATCCACCGGAGCCTTGGGTTTGGATTGGGC
 
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JMSF050J08+           GGCCTTGAGGCAGATGTCCCGGTAGCATTTGGAGCAGTAATTCTGCGTCGCCGGGCTGCC
JMFN005H09+                          GTCCCGGTAACATTTGGGGCAGTAATTCTGCGTGGCGGGGCTGCC
JMFN013N08+           GGCCTTGAGGCAGATGTCCCGGTAGCATTTGGAGCAGTAATTCTGCGTCGCCGGGCTGCC
JMFN005D14+                          GTCCCGGTAACATTTGGGGCAGTAATTCTGCGTGGCGGGGCTGCC
                      ____________________________________________________________
consensus             GGCCTTGAGGCAGATGTCCCGGTAGCATTTGGGGCAGTAATTCTGCGTGGCGGGGCTGCC
 
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JMSF050J08+           GAAAAAGCCGCAGTTGTTGGCGCA                                    
JMFN005H09+           GAAGAAGCCGCAGTTGTTGGCGCA                                    
JMFN013N08+           GAAAAAGCCGCAGTTGTTGGCGCA                                    
JMFN005D14+           GAAGAAGCCGCAGTTGTTGGCGCACAAGCGGTGCCCCTCCGGCGCCTGGAATCCGTGCTC
                      ____________________________________________________________
consensus             GAAGAAGCCGCAGTTGTTGGCGCACAAGCGGTGCCCCTCCGGCGCCTGGAATCCGTGCTC
 
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JMFN005D14+           TTCCGCCATAGCCGATGATGCAAATTAAATCCAAGAAAAAAAAAAAAAAAACAGCTTTGA
                      ____________________________________________________________
consensus             TTCCGCCATAGCCGATGATGCAAATTAAATCCAAGAAAAAAAAAAAAAAAACAGCTTTGA
 
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JMFN005D14+           TTAATTCCCGATGACGAAGAAACAAAAAGCGTATAAACCCAGAAGCTGAGAGCAAAAAAG
                      ____________________________________________________________
consensus             TTAATTCCCGATGACGAAGAAACAAAAAGCGTATAAACCCAGAAGCTGAGAGCAAAAAAG
 
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JMFN005D14+           ATGAGAAATGGGTGAACTATAAAGGGAGAGGTTGAGGGTTGAAAAACCCAAAAAGAATTC
                      ____________________________________________________________
consensus             ATGAGAAATGGGTGAACTATAAAGGGAGAGGTTGAGGGTTGAAAAACCCAAAAAGAATTC