Contig 000299:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051I07Sequence566000299 (2)ref|XP_010069413.1|2e-68PREDICTED: ADP-ribosylation factor-like protein 5 [Eucalyptus grandis] ref|XP_0
JMFN004D10Sequence642000299 (2)gb|KDP40255.1|1e-109hypothetical protein JCGZ_02253 [Jatropha curcas]

Alignment

This contig is upended


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JMFN004D10+                                               CTCCAAACCATCATAGAGGCCATC
                      ____________________________________________________________
consensus                                                 CTCCAAACCATCATAGAGGCCATC
 
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JMFN004D10+           ACCAGTAAGGGCGCAGCTGGCTTGGATGTGCCAATCGTGGTTTTTAATGCTGTGAAGAGA
                      ____________________________________________________________
consensus             ACCAGTAAGGGCGCAGCTGGCTTGGATGTGCCAATCGTGGTTTTTAATGCTGTGAAGAGA
 
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JMFN004D10+           AATAGCATCGGTTATCTCTGCAGGAGTCATGGCTTCTTTGAGGTCTTGCTTGTTTGCGTA
                      ____________________________________________________________
consensus             AATAGCATCGGTTATCTCTGCAGGAGTCATGGCTTCTTTGAGGTCTTGCTTGTTTGCGTA
 
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JMFN004D10+           TACAAGCACAACAGCATTCTGCAAATCTTCATGTGGGAGCAGATTGAACAGTTCGTCTTT
JMFF051I07+                                             GGGAGCAGATTGAACAGTTCGTCTTT
                      ____________________________________________________________
consensus             TACAAGCACAACAGCATTCTGCAAATCTTCATGTGGGAGCAGATTGAACAGTTCGTCTTT
 
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JMFN004D10+           TATAATGGAAATTCGGGCTCTGTCTGTACTGTCTATGACTACAATGACAGCATTAGTTCC
JMFF051I07+           TATAATGGAAATTCGGGCTCTGTCTGTACTGTCTATGACTACAATGACAGCATTAGTTCC
                      ____________________________________________________________
consensus             TATAATGGAAATTCGGGCTCTGTCTGTACTGTCTATGACTACAATGACAGCATTAGTTCC
 
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JMFN004D10+           TCGGTAGTAGGTTGCCCATGAAGTCCTGAGCCTCTCTTGCCCGCCAAGATCCCACACCTC
JMFF051I07+           TCGGTAGTAGGTTGCCCATGAAGTCCTGAGCCTCTCTTGCCCGCCAAGATCCCACACCTC
                      ____________________________________________________________
consensus             TCGGTAGTAGGTTGCCCATGAAGTCCTGAGCCTCTCTTGCCCGCCAAGATCCCACACCTC
 
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JMFN004D10+           GAATCGTATATTTTTGTAGACTAGCTCCTCAACGTTACTGCCAACAGTAGGATGAGTAGT
JMFF051I07+           GAATCGTATATTTTTGTAGACTAGCTCCTCAACGTTACTGCCAACAGTAGGATGAGTAGT
                      ____________________________________________________________
consensus             GAATCGTATATTTTTGTAGACTAGCTCCTCAACGTTACTGCCAACAGTAGGATGAGTAGT
 
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JMFN004D10+           GACCACCTCTCCCAAATGTAACTTGTAAAGCGTCGTCGTTTTTCCGGCGTTATCCAGGCC
JMFF051I07+           GACCACCTCTCCCAAATGTAACTTGTAAAGCGTCGTCGTTTTTCCGGCGTTATCCAGGCC
                      ____________________________________________________________
consensus             GACCACCTCTCCCAAATGTAACTTGTAAAGCGTCGTCGTTTTTCCGGCGTTATCCAGGCC
 
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JMFN004D10+           GACGACCACGATCTTGTACTCATTTGCCGGGAGCAGCATGAACCAGAACC          
JMFF051I07+           GACGACCACGATCTTGTACTCATTTGCCGGGAACAGCATGAACCAGAACCGGGAAAACAT
                      ____________________________________________________________
consensus             GACGACCACGATCTTGTACTCATTTGCCGGGAGCAGCATGAACCAGAACCGGGAAAACAT
 
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JMFF051I07+           CGCCCCCATATTTGGCCTACTGGATTCACAGAGAATGCTTGTATCTAATCCGGATTACAC
                      ____________________________________________________________
consensus             CGCCCCCATATTTGGCCTACTGGATTCACAGAGAATGCTTGTATCTAATCCGGATTACAC
 
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JMFF051I07+           AGAGATCTGATGGGAAAATACTAGCGTCAGGATTTGGCATTGAAATTCGATTTGGTGCGG
                      ____________________________________________________________
consensus             AGAGATCTGATGGGAAAATACTAGCGTCAGGATTTGGCATTGAAATTCGATTTGGTGCGG
 
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JMFF051I07+           TGGAGAATGGAGATAGATGTTATTTTGATTTCATTGTTACCCCCGCGATGAAGAAAAGTG
                      ____________________________________________________________
consensus             TGGAGAATGGAGATAGATGTTATTTTGATTTCATTGTTACCCCCGCGATGAAGAAAAGTG
 
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JMFF051I07+           CTCAAAGTAGAATAGAAATATTAATTTCATAAAGTATTTATTATATGAAAACTACAATAC
                      ____________________________________________________________
consensus             CTCAAAGTAGAATAGAAATATTAATTTCATAAAGTATTTATTATATGAAAACTACAATAC