Contig 000298:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028I22Sequence551000298 (6)ref|XP_011078757.1|8e-36PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like591000298 (6)ref|XP_011078757.1|1e-35PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like
JMFF051G21Sequence613000298 (6)ref|XP_011078757.1|1e-35PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like642017038ref|XP_011078757.1|1e-35PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like
JMFN007O22Sequence614000298 (6)ref|XP_011078757.1|1e-35PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like
JMSF006N05Sequence319000298 (6)ref|XP_011078758.1|2e-23PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like
JMSF006N07Sequence253009398 (7)452000298 (6)ref|XP_011078757.1|4e-34PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN007O22+ ATC
JMFF051G21+ CCATATAAAGATC
                      ____________________________________________________________
consensus CCATATAAAGATC
 
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rJMFF028I22- GTCTTACCAAATACTAACTCATCCAAGAAATTCAAACACTATAACTTAGCT
JMFF028I22+ ATAACTTAGCT
JMFN007O22+ TTATTAGCAGTCTTACCAAATACTAACTCATCCAAGAAATTCAAACACTATAACTTAGCT
JMFF051G21+ TTATTAGCAGTCTTACCAAATACTAACTCATCCAAGAAATTCAAACACTATAACTTAGCT
                      ____________________________________________________________
consensus TTATTAGCAGTCTTACCAAATACTAACTCATCCAAGAAATTCAAACACTATAACTTAGCT
 
. : . : . : . : . : . :
rJMFF028I22- TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
JMFF028I22+ TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
JMFN007O22+ TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
rJMSF006N07- ACCTAGTAGCAGTA
JMFF051G21+ TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
                      ____________________________________________________________
consensus TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
 
. : . : . : . : . : . :
rJMFF028I22- GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
JMFF028I22+ GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
JMFN007O22+ GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
rJMSF006N07- GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
JMFF051G21+ GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
                      ____________________________________________________________
consensus GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
 
. : . : . : . : . : . :
rJMFF028I22- ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
JMFF028I22+ ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
JMFN007O22+ ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
rJMSF006N07- ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
JMFF051G21+ ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
                      ____________________________________________________________
consensus ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
 
. : . : . : . : . : . :
rJMFF028I22- CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
JMFF028I22+ CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
JMFN007O22+ CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
rJMSF006N07- CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCANTAGTGCG
JMSF006N05+ TGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
JMFF051G21+ CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
                      ____________________________________________________________
consensus CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
 
. : . : . : . : . : . :
rJMFF028I22- GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
JMFF028I22+ GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
JMFN007O22+ GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
rJMSF006N07- GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
JMSF006N05+ GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
JMFF051G21+ GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
                      ____________________________________________________________
consensus GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
 
. : . : . : . : . : . :
rJMFF028I22- AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
JMFF028I22+ AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
JMFN007O22+ AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAA
rJMSF006N07- AAGCTCCGGCACCCCAAGCCCGAACNAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
JMSF006N05+ AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
JMFF051G21+ AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
                      ____________________________________________________________
consensus AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
 
. : . : . : . : . : . :
rJMFF028I22- TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
JMFF028I22+ TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
rJMSF006N07- TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
JMSF006N05+ TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
JMFF051G21+ TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
                      ____________________________________________________________
consensus TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
 
. : . : . : . : . : . :
rJMFF028I22- GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
JMFF028I22+ GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
rJMSF006N07- GAA
JMSF006N05+ GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
JMFF051G21+ GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
                      ____________________________________________________________
consensus GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
 
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rJMFF028I22- GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTTGAAGAAAATGTAGTTAC
JMFF028I22+ GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTTGAAGAAAATGTAGTTAC
JMSF006N05+ GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTT
JMFF051G21+ GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTTGAAGAAAATGTAGTTAC
                      ____________________________________________________________
consensus GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTTGAAGAAAATGTAGTTAC