| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028I22 | Sequence | 551 | 000298 (6) | ref|XP_011078757.1| | 8e-36 | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like | 591 | 000298 (6) | ref|XP_011078757.1| | 1e-35 | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like |
| JMFF051G21 | Sequence | 613 | 000298 (6) | ref|XP_011078757.1| | 1e-35 | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like | 642 | 017038 | ref|XP_011078757.1| | 1e-35 | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like |
| JMFN007O22 | Sequence | 614 | 000298 (6) | ref|XP_011078757.1| | 1e-35 | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like | |||||
| JMSF006N05 | Sequence | 319 | 000298 (6) | ref|XP_011078758.1| | 2e-23 | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like | |||||
| JMSF006N07 | Sequence | 253 | 009398 (7) | 452 | 000298 (6) | ref|XP_011078757.1| | 4e-34 | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like | |||
This contig is upended
. : . : . : . : . : . :
JMFN007O22+ ATC
JMFF051G21+ CCATATAAAGATC
____________________________________________________________
consensus CCATATAAAGATC
. : . : . : . : . : . :
rJMFF028I22- GTCTTACCAAATACTAACTCATCCAAGAAATTCAAACACTATAACTTAGCT
JMFF028I22+ ATAACTTAGCT
JMFN007O22+ TTATTAGCAGTCTTACCAAATACTAACTCATCCAAGAAATTCAAACACTATAACTTAGCT
JMFF051G21+ TTATTAGCAGTCTTACCAAATACTAACTCATCCAAGAAATTCAAACACTATAACTTAGCT
____________________________________________________________
consensus TTATTAGCAGTCTTACCAAATACTAACTCATCCAAGAAATTCAAACACTATAACTTAGCT
. : . : . : . : . : . :
rJMFF028I22- TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
JMFF028I22+ TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
JMFN007O22+ TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
rJMSF006N07- ACCTAGTAGCAGTA
JMFF051G21+ TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
____________________________________________________________
consensus TAGCAATCAACAATATTCAGAAATCAAATGCGACGTACAAAAACAAACCTAGTAGCAGTA
. : . : . : . : . : . :
rJMFF028I22- GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
JMFF028I22+ GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
JMFN007O22+ GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
rJMSF006N07- GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
JMFF051G21+ GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
____________________________________________________________
consensus GTAGATGATTGAATGTATCGTCATAGTAGTTTAGGAAGCCTCCCTCGTCTTCTCTTCTTG
. : . : . : . : . : . :
rJMFF028I22- ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
JMFF028I22+ ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
JMFN007O22+ ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
rJMSF006N07- ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
JMFF051G21+ ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
____________________________________________________________
consensus ACTGACAGCTTTTAGTTCCTCTATAGCAGGCTCGGCTAGAGCACCAGGGTCCTTTTTCAT
. : . : . : . : . : . :
rJMFF028I22- CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
JMFF028I22+ CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
JMFN007O22+ CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
rJMSF006N07- CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCANTAGTGCG
JMSF006N05+ TGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
JMFF051G21+ CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
____________________________________________________________
consensus CTCCAGTTCAAATTCCTTTGCTGCCTGTTGGAAGCTCTTGAAGGTCTTGCCAATAGTGCG
. : . : . : . : . : . :
rJMFF028I22- GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
JMFF028I22+ GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
JMFN007O22+ GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
rJMSF006N07- GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
JMSF006N05+ GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
JMFF051G21+ GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
____________________________________________________________
consensus GCCGACTTCTGGCAACTGTTTAGGGCCGAAGAGGAGGGTTGTGACGCCGGCGATGACCAC
. : . : . : . : . : . :
rJMFF028I22- AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
JMFF028I22+ AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
JMFN007O22+ AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAA
rJMSF006N07- AAGCTCCGGCACCCCAAGCCCGAACNAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
JMSF006N05+ AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
JMFF051G21+ AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
____________________________________________________________
consensus AAGCTCCGGCACCCCAAGCCCGAACAAGCAATTGCAAGAAAAGCGCTTTGTAGGAGCGGA
. : . : . : . : . : . :
rJMFF028I22- TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
JMFF028I22+ TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
rJMSF006N07- TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
JMSF006N05+ TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
JMFF051G21+ TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
____________________________________________________________
consensus TCTGGGACGGGTAACCAGCTTGAGCCCGGCCCGGTTGCTGCTCAAGGACAATGAGCTAGA
. : . : . : . : . : . :
rJMFF028I22- GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
JMFF028I22+ GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
rJMSF006N07- GAA
JMSF006N05+ GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
JMFF051G21+ GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
____________________________________________________________
consensus GAAAGATAAAGAAGTAGTTGAAGAAGGAGAAGTGGGTTTTGATCGGGCGAGAGAGAGGGA
. : . : . : . : . : . :
rJMFF028I22- GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTTGAAGAAAATGTAGTTAC
JMFF028I22+ GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTTGAAGAAAATGTAGTTAC
JMSF006N05+ GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTT
JMFF051G21+ GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTTGAAGAAAATGTAGTTAC
____________________________________________________________
consensus GAGAGTGGTTGCTGGTGAAGAGTTGGTTGCCATTTTCGGATTTGAAGAAAATGTAGTTAC