Contig 000297:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001N11Sequence570000297 (6)dbj|BAQ15377.1|9e-110cryptochrome 1 [Ipomoea nil]729006767 (7)dbj|BAQ15377.1|8e-43cryptochrome 1 [Ipomoea nil]
JMFF034D21Sequence566000297 (6)dbj|BAQ15377.1|6e-109cryptochrome 1 [Ipomoea nil]546006767 (7)dbj|BAF95170.1|5e-30cryptochrome 1 [Ipomoea nil]
JMFF051G12Sequence590000297 (6)dbj|BAQ15377.1|2e-86cryptochrome 1 [Ipomoea nil]498006767 (7)dbj|BAF95170.1|6e-24cryptochrome 1 [Ipomoea nil]
JMFS118F12Sequence600000297 (6)dbj|BAQ15377.1|6e-103cryptochrome 1 [Ipomoea nil]
JMSF021I15Sequence670000297 (6)dbj|BAQ15377.1|1e-119cryptochrome 1 [Ipomoea nil]813006767 (7)dbj|BAQ15377.1|3e-88cryptochrome 1 [Ipomoea nil]
JMSF022E02Sequence672000297 (6)dbj|BAQ15377.1|3e-120cryptochrome 1 [Ipomoea nil]758006767 (7)dbj|BAQ15377.1|7e-78cryptochrome 1 [Ipomoea nil]

Alignment

This contig is upended


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JMSF021I15+                                                             CTGAAGGACA
JMSF022E02+                                                           TACTGAAGGACA
                      ____________________________________________________________
consensus                                                             TACTGAAGGACA
 
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JMSF021I15+           TCGAGACACATCACCAGAAACAATCCGTTTAGGAGGGAGAAGTGGAGCCTCGGGATCATA
JMFS118F12+                                                              GGGATCATA
JMFF001N11+                                            AGGGAGAAGTGGAGCCTCGGGATCATA
JMFF034D21+                                            AGGGAGAAGTGGAGCCTCGGGATCATA
JMSF022E02+           TCGAGACACATCACCAGAAACAATCCGTTTAGGAGGGAGAAGTGGAGCCTCGGGATCATA
                      ____________________________________________________________
consensus             TCGAGACACATCACCAGAAACAATCCGTTTAGGAGGGAGAAGTGGAGCCTCGGGATCATA
 
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JMSF021I15+           AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMFS118F12+           AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMFF001N11+           AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMFF034D21+           AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMSF022E02+           AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
JMFF051G12+                    AAGGCATCTATCCCAAAAAGCGCTGAAGG-TGTGAAAGGGTGACCTTCATC
                      ____________________________________________________________
consensus             AGGCATGCTAAGGCATCTATCCCAAAAAGCGCTGAAGGTTGTGAAAGGGTGACCTTCATC
 
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JMSF021I15+           ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMFS118F12+           ATCCACAACTTCGCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMFF001N11+           ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMFF034D21+           ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMSF022E02+           ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
JMFF051G12+           ATCCACAACTTCNCAGGGCTCATACAGCAAATCAGAATGNAAGGAGCGCACAGTCACACC
                      ____________________________________________________________
consensus             ATCCACAACTTCCCAGGGCTCATACAGCAAATCAGAATTGAAGGAGCGCACAGTCACACC
 
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JMSF021I15+           TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMFS118F12+           TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMFF001N11+           TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMFF034D21+           TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMSF022E02+           TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
JMFF051G12+           TGAAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
                      ____________________________________________________________
consensus             TTGAGCCGTTAAAATTTCCTTTGCACGATGATCCCTAACAAGCGACAACGGATCATATAA
 
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JMSF021I15+           GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMFS118F12+           GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMFF001N11+           GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMFF034D21+           GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMSF022E02+           GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
JMFF051G12+           GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
                      ____________________________________________________________
consensus             GTGGTTGAAGAAGAGGTGAGAGGCACCAGTAGACTTGATAACTTCAATCAGAGAGGAAAC
 
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JMSF021I15+           ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMFS118F12+           ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMFF001N11+           ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMFF034D21+           ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMSF022E02+           ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
JMFF051G12+           ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
                      ____________________________________________________________
consensus             ACTGTCAGTAGATCTCTTTGTGATTAGGGTAGTGCCCAGACTCCTGAGAGAAGAATCCAG
 
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JMSF021I15+           ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMFS118F12+           ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMFF001N11+           ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMFF034D21+           ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMSF022E02+           ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
JMFF051G12+           ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
                      ____________________________________________________________
consensus             ATGAGCCAAACTCTGCTTAAGCCACCATCTTGAAACCCTGCCAGGATAATAGTGCCCTTC
 
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JMSF021I15+           TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMFS118F12+           TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMFF001N11+           TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMFF034D21+           TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMSF022E02+           TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
JMFF051G12+           TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
                      ____________________________________________________________
consensus             TTCCTCAGGAGCCCAGATGAAGAGTGCTATGATTGCCCCAGACCTCACCCCTGCAGCCAA
 
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JMSF021I15+           AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMFS118F12+           AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMFF001N11+           AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMFF034D21+           AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMSF022E02+           AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
JMFF051G12+           AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
                      ____________________________________________________________
consensus             AGCAGGGTTGTCTTCCACTCTCAGATCCCTCCTAAACCACACTATACTGCACCCACCACT
 
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JMSF021I15+           TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
JMFS118F12+           TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
JMFF001N11+           TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAAC 
JMFF034D21+           TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAAC 
JMSF022E02+           TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
JMFF051G12+           TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
                      ____________________________________________________________
consensus             TGACATCTCTCCAGAACTCCAAGAACCCTAAAAGCCCAGAAGATTAGAAGAAGAAGAACA
 
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JMSF021I15+           ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTGTCTTTC   
JMFS118F12+           ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTG         
JMSF022E02+           ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTGTCTTTC   
JMFF051G12+           ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTGTCTTTCCGG
                      ____________________________________________________________
consensus             ACAAAAACACTTCCTCAGTTCCTCCTACCTACAACACACCATGCCAGTGTGTCTTTCCGG