Contig 000294:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003K03Sequence512000294 (3)ref|XP_004245471.1|7e-40PREDICTED: FAS-associated factor 2-like [Solanum lycopersicum]761008400 (3)ref|XP_004173966.1|1e-61PREDICTED: FAS-associated factor 2-B-like, partial [Cucumis sativus]
JMFF003M03Sequence555000294 (3)ref|XP_004245471.1|7e-30PREDICTED: FAS-associated factor 2-like [Solanum lycopersicum]774008400 (3)ref|XP_004173966.1|2e-61PREDICTED: FAS-associated factor 2-B-like, partial [Cucumis sativus]
JMFF051A14Sequence598000294 (3)ref|XP_004245471.1|6e-35PREDICTED: FAS-associated factor 2-like [Solanum lycopersicum]602008400 (3)gb|KGN49992.1|2e-44hypothetical protein Csa_5G148630 [Cucumis sativus]

Alignment

This contig is upended


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JMFF003K03+                                           GGAAGCGTGGCCGTTGCGTCCAGAATTG
                      ____________________________________________________________
consensus                                             GGAAGCGTGGCCGTTGCGTCCAGAATTG
 
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JMFF003K03+           AAGCCGATCATGCCCAAAGAAAACGAAAGAACGCCACTTGCTGCCCACACTCCAAGCCCA
JMFF003M03+                                                        CACACTCCAAGCCCA
JMFF051A14+             GCCGATCATGCCCAAAGAAAACGAAAGAACGCCACTTGCTGCCCACACTCCAAGCCCA
                      ____________________________________________________________
consensus             AAGCCGATCATGCCCAAAGAAAACGAAAGAACGCCACTTGCTGCCCACACTCCAAGCCCA
 
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JMFF003K03+           ATTGCGCCCGAAACCAAACCTAGACTACCAGAAATTATAGAGAATGGCAGTGTAATGAGT
JMFF003M03+           ATTGCGCCCGAAACCAAACCTAGACTACCAGAAATTATAGAGAATGGCAGTGTAATGAGT
JMFF051A14+           ATTGCGCCCGAAACCAAACCTAGACTACCAGAAATTATAGAGAATGGCAGTGTAATGAGT
                      ____________________________________________________________
consensus             ATTGCGCCCGAAACCAAACCTAGACTACCAGAAATTATAGAGAATGGCAGTGTAATGAGT
 
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JMFF003K03+           TTCCAAGCCAGACCAGGGGGCCCACCATCGCCGGCAACGAGCAGCCCCGTTTCTCGGTGG
JMFF003M03+           TTCCAAGCCAGACCAGGGGGCCCACCATCGCCGGCAACGAGCAGCCCCGTTTCTCGGTGG
JMFF051A14+           TTCCAAGCCAGACCAGGGGGCCCACCATCGCCGGCAACGAGCAGCCCCGTTTCTCGGTGG
                      ____________________________________________________________
consensus             TTCCAAGCCAGACCAGGGGGCCCACCATCGCCGGCAACGAGCAGCCCCGTTTCTCGGTGG
 
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JMFF003K03+           TCTTGATTCATACCCGCGTTGGACGAAGTTGAGTTGTCGATGGGTGCTTCAGAGCTGGTC
JMFF003M03+           TCTTGATTCATACCCGCGTTGGACGAAGTTGAGTTGTCGATGGGTGCTTCAGAGCTGGTC
JMFF051A14+           TCTTGATTCATACCCGCGTTGGACGAAGTTGAGTTGTCGATGGGTGCTTCAGAGCTGGTC
                      ____________________________________________________________
consensus             TCTTGATTCATACCCGCGTTGGACGAAGTTGAGTTGTCGATGGGTGCTTCAGAGCTGGTC
 
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JMFF003K03+           GCCGCTTCGGAACGATTGTTCTCGGAGATGAAAGAGGAAATCGCTAGTTCGAGATCCCAG
JMFF003M03+           GCCGCTTCGGAACGATTGTTCTCGGAGATGAAAGAGGAAATCGCTAGTTCGAGATCCCAG
JMFF051A14+           GCCGCTTCGGAACGATTGTTCTCGGAGATGAAAGAGGAAATCGCTAGTTCGAGATCCCAG
                      ____________________________________________________________
consensus             GCCGCTTCGGAACGATTGTTCTCGGAGATGAAAGAGGAAATCGCTAGTTCGAGATCCCAG
 
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JMFF003K03+           CCATGGGCGGACAGGATCTCCGTGCACAACTCGGTGTCTTCAACCCCAGTGATCGCTTTA
JMFF003M03+           CCATGGGCGGACAGGATCTCCGTGCACAACTCGGTGTCTTCAACCCCAGTGATCGCTTTA
JMFF051A14+           CCATGGGCGGACAGGATCTCCGTGCACAACTCGGTGTCTTCAACCCCAGTGATCGCTTTA
                      ____________________________________________________________
consensus             CCATGGGCGGACAGGATCTCCGTGCACAACTCGGTGTCTTCAACCCCAGTGATCGCTTTA
 
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JMFF003K03+           AAATACGCCAGTTTATCAGCCATATCCCCCATTCCTCCACGTCTGTATTGCTGAGAATTA
JMFF003M03+           AAATACGCCAGTTTATCAGCCATATCCCCCATTCCTCCACGTCTGTATTGCTGAGAATTA
JMFF051A14+           AAATACGCCAGTTTATCAGCCATATCCCCCATTCCTCCACGTCTGTATTGCTGAGAATTA
                      ____________________________________________________________
consensus             AAATACGCCAGTTTATCAGCCATATCCCCCATTCCTCCACGTCTGTATTGCTGAGAATTA
 
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JMFF003K03+           GGGTTTTGATTAAAGAGCGCGCTCTCTCTCTCTCTCTCTCTCCCACCCCTGCTACTTGTT
JMFF003M03+           GGGTTTTGATTAAAGAGCGCGCTCTCTCTCTCTCTCTCTCTCCCACCCCTGCTACTTGTT
JMFF051A14+           GGGTTTTGATTAAAGAGCGCGCTCTCTCTCTCTCTCTCTCTCCCACCCCTGCTACTTGTT
                      ____________________________________________________________
consensus             GGGTTTTGATTAAAGAGCGCGCTCTCTCTCTCTCTCTCTCTCCCACCCCTGCTACTTGTT
 
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JMFF003K03+           CGAC                                                        
JMFF003M03+           CGACGAAATCACGCTGTGGAAAAATCGAGAGATTATTATGCTGGTGTGGAGTGGTGCCTC
JMFF051A14+           CGACGAAATCACGCTGTGGAAAAATCGAGAGATTATTATGCTGGTGTGGAGTGGTGCCTC
                      ____________________________________________________________
consensus             CGACGAAATCACGCTGTGGAAAAATCGAGAGATTATTATGCTGGTGTGGAGTGGTGCCTC
 
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JMFF003M03+           CCTCCCGCGGTGGGTTAATGGTGGTAGATGAGACTTGTAATCTCGGAGACAGGGAACGAT
JMFF051A14+           CCTCCCGCGGTGGGTTAATGGTGGTAGATGAGACTTGTAATCTCGGAGACAGGGAACGAT
                      ____________________________________________________________
consensus             CCTCCCGCGGTGGGTTAATGGTGGTAGATGAGACTTGTAATCTCGGAGACAGGGAACGAT