| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016B14 | Sequence | 564 | 000285 (4) | ref|XP_009588089.1| | 7e-11 | PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [ | 542 | 005524 (7) | ref|XP_009591201.1| | 4e-55 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo |
| JMFF045H23 | Sequence | 632 | 000285 (4) | ref|XP_009588089.1| | 2e-26 | PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [ | 583 | 005524 (7) | ref|XP_009591201.1| | 1e-55 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo |
| JMFF050E08 | Sequence | 579 | 000285 (4) | ref|XP_009588089.1| | 4e-11 | PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [ | 571 | 005524 (7) | ref|XP_009591201.1| | 8e-56 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo |
| JMSF008D13 | Sequence | 358 | 000285 (4) | 118 | 005524 (7) | ||||||
This contig is upended
. : . : . : . : . : . :
JMFF045H23+ TAAGGCCAAGAAGGTTTCCAAGATGGAGGCTTT
____________________________________________________________
consensus TAAGGCCAAGAAGGTTTCCAAGATGGAGGCTTT
. : . : . : . : . : . :
JMFF016B14+ GGTGGGAGATTCGGATCGGAGCAAA
JMFF045H23+ CAGCCGTCGGGTCAAACCCACAATAGACTNTGAGGGGTGGGAGATTCGGATCGGAGCAAA
JMFF050E08+ ATTCGGATCGGAGCAAA
____________________________________________________________
consensus CAGCCGTCGGGTCAAACCCACAATAGACTNTGAGGGGTGGGAGATTCGGATCGGAGCAAA
. : . : . : . : . : . :
JMFF016B14+ TTGAACGGAGGTTTTCGCTAGTGACGGACTCCAGTAATCCTCTCTCCTCTAAAATCTCCA
JMFF045H23+ TTGAACGGAGGTTTTCGCTAGTGACGGACTCCAGTAATCCTCTCTCCTCTAAAATCTCCA
JMFF050E08+ TTGAACGGAGGTNTTCGCTAGTGACGGACTCCAGTAATCCTCTCTCCTCTAAAATCTCCA
____________________________________________________________
consensus TTGAACGGAGGTTTTCGCTAGTGACGGACTCCAGTAATCCTCTCTCCTCTAAAATCTCCA
. : . : . : . : . : . :
JMFF016B14+ CCACGTTCCGCCTTCGCTGCCGCTGGTCGGATTCCATCTCCGGCTCACTCTTGAGCTGGG
JMFF045H23+ CCACGTTCCGCCTTCGCTGCCGCTGGTCGGATTCCATCTCCGGCTCACTCTTGAGCTGGG
JMFF050E08+ CCACGTTCCGCCTTCGCTGCCGCTGGTCGGATTCCATCTCCGGCTCACTCTTGAGCTGGG
____________________________________________________________
consensus CCACGTTCCGCCTTCGCTGCCGCTGGTCGGATTCCATCTCCGGCTCACTCTTGAGCTGGG
. : . : . : . : . : . :
JMFF016B14+ GAATAAACTGGGCGGAGGAGCACAACGGCGATGAAGAATAGCAAAAGAGGCTGCTGCGGC
JMFF045H23+ GAATAAACTGGGCGGAGGAGCACAACGGCGATGAAGAATAGCAAAAGAGGCTGCTGCGGC
JMFF050E08+ GAATAAACTGGGCGGAGGAGCACAACGGCGATGAAGAATAGCAAAAGAGGCTGCTGCGGC
____________________________________________________________
consensus GAATAAACTGGGCGGAGGAGCACAACGGCGATGAAGAATAGCAAAAGAGGCTGCTGCGGC
. : . : . : . : . : . :
JMFF016B14+ GGCGGTGAGAAGTGAGTAGTCGGATTGGGAATTTTTGGATGAAAAGGGGAGAGAAGTGCC
JMFF045H23+ GGCGGTGAGAAGTGAGTAGTCGGATTGGGAATTTTTGGATGAAAAGGGGAGAGAAGTGCC
JMSF008D13+ TGAGAAGTGAGTANTCGGATTGGGAATTTTTGGATGAAAAGGGGAGAGAAGTGCC
JMFF050E08+ GGCGGTGAGAAGTGAGTAGTCGGATTGGGAATTTTTGGATGAAAAGGGGAGAGAAGTGCC
____________________________________________________________
consensus GGCGGTGAGAAGTGAGTAGTCGGATTGGGAATTTTTGGATGAAAAGGGGAGAGAAGTGCC
. : . : . : . : . : . :
JMFF016B14+ TATGGGCGCCATTAAGAATAAAGGTTCTGACAGAAGCCATGCGTGCGTTAGTGTTATCTG
JMFF045H23+ TATGGGCGCCATTAAGAATAAAGGTTCTGACAGAAGCCATGCGTGCGTTAGTGTTATCTG
JMSF008D13+ TATGGGCGCCATTAAGAATAAAGGTTCTGACAGAAGCCATGCGTGCGTTAGTGTTATCTG
JMFF050E08+ TATGGGCGCCATTAAGAATAAAGGTTCTGACAGAAGCCATGCGTGCGTTAGTGTTATCTG
____________________________________________________________
consensus TATGGGCGCCATTAAGAATAAAGGTTCTGACAGAAGCCATGCGTGCGTTAGTGTTATCTG
. : . : . : . : . : . :
JMFF016B14+ CACACTAAAGAGTTTTGTGGATAGCAGCAATGGAGGATACCAATAGGCGAATTTGTAGCT
JMFF045H23+ CACACTAAAGAGTTTTGTGGATAGCAGCAATGGAGGATACCAATAGGCGAATTTGTAGCT
JMSF008D13+ CACACTAAAGAGTTTTGTGGATAGCAGCAATGGAGGATACCAATAGGCGAATTTGTAGCT
JMFF050E08+ CACACTAAAGAGTTTTGTGGATAGCAGCAATGGAGGATACCAATAGGCGAATTTGTAGCT
____________________________________________________________
consensus CACACTAAAGAGTTTTGTGGATAGCAGCAATGGAGGATACCAATAGGCGAATTTGTAGCT
. : . : . : . : . : . :
JMFF016B14+ TAAGTTATGATGTTGAACTGAATACTGAGAGGAGACCAGAGGCACTGCCGGCGGTTCTTG
JMFF045H23+ TAAGTTATGATGTTGAACTGAATACTGAGAGGAGACCAGAGGCACTGCCGGCGGTTCTTG
JMSF008D13+ TAAGTTATGATGTTGAACTGAATACTGAGAGGAGACCAGAGGCACTGCCGGCGGTTCTTG
JMFF050E08+ TAAGTTATGATGTTGAACTGAATACTGAGAGGAGACCAGAGGCACTGCCGGCGGTTCTTG
____________________________________________________________
consensus TAAGTTATGATGTTGAACTGAATACTGAGAGGAGACCAGAGGCACTGCCGGCGGTTCTTG
. : . : . : . : . : . :
JMFF016B14+ CTGACCGGCGGGCGGCGACTGAGGGCTGAGGGGGTTACGGCGGTAAGGCGGCGAGCCGGA
JMFF045H23+ CTGACCGGCGGGCGGCGACTGAGGGCTGAGGGGGTTACGGCGGTAAGGCGGCGAGCCGGA
JMSF008D13+ CTGACCGGCGGGCGGCGACTGAGGGCTGAGGGGGTTACGGCGGTAAGGCGGCGAGCCGGA
JMFF050E08+ CTGACCGGCGGGCGGCGACTGAGGGCTGAGGGGGTTACGGCGGTAAGGCGGCGAGCCGGA
____________________________________________________________
consensus CTGACCGGCGGGCGGCGACTGAGGGCTGAGGGGGTTACGGCGGTAAGGCGGCGAGCCGGA
. : . : . : . : . : . :
JMFF016B14+ AGCGGTGAAGCAGCGACCCCGGCGACTCCAGTCTCCAAAGCTCTGCGTGAAC
JMFF045H23+ AGCGGTGAAGCAGCGACCCCGGCGACTCCAGTCTCCAAAGCTCTGCGTGAAC
JMSF008D13+ AGCGGTGAAGCAGCGACTCCGGCGACTCCAGTCTCCAAAGCTCTGCGTGAAC
JMFF050E08+ AGCGGTGAAGCAGCGACTCCGGCGACTCCAGTCTCCAAAGCTCTGCGTGAACTGCTATCT
____________________________________________________________
consensus AGCGGTGAAGCAGCGACTCCGGCGACTCCAGTCTCCAAAGCTCTGCGTGAACTGCTATCT