Contig 000278:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049J15Sequence648000278 (3)ref|XP_011099963.1|1e-84PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [S
JMFF050G10Sequence613000278 (3)ref|XP_011099963.1|8e-74PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [S632021342gb|ABV02017.1|1e-1001-deoxy-D-xylulose-5-phosphate synthase [Nicotiana langsdorffii x Nicotiana san
JMFS009H08Sequence614000278 (3)ref|XP_011099963.1|1e-74PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [S

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF050G10+ CGAAAGCATCATACGT
JMFS009H08+ ACACCGAAAGCATCATACGT
JMFF049J15+ AGCTGAAATGCTGGTGAACTGTGGCCTNACACCGAAAGCATCATACGT
                      ____________________________________________________________
consensus AGCTGAAATGCTGGTGAACTGTGGCCTNACACCGAAAGCATCATACGT
 
. : . : . : . : . : . :
JMFF050G10+ GCTCTCGTCCCG-TTTGGAAAGCCTGCTAGTCCTGAAGTCTTCCTTATGGTGTGCATTTA
JMFS009H08+ GCTCTCGTCCCG-TTTGGAAAGCCTGCTAGTCCTGAAGTCTTCCTTATGGTGTGCATTTT
JMFF049J15+ GCTCTCGTCCCGTTTTGGAAAGCCTGCTAGTCCTGAAGTCTTCCTTATGGTGTGCATTTT
                      ____________________________________________________________
consensus GCTCTCGTCCCG-TTTGGAAAGCCTGCTAGTCCTGAAGTCTTCCTTATGGTGTGCATTTT
 
. : . : . : . : . : . :
JMFF050G10+ NGACCTCCTTCCTGTCAAGATTTTATGTGCATATGTTTGATGGCCTACATCCCATATTAC
JMFS009H08+ AGACCTCCTTCCTGTCAAGATTTTATGTGCATATGTTTGATGGCCTACATCCCATATTAC
JMFF049J15+ AGACCTCCTTCCTGTCAAGATTTTATGTGCATATGTTTGATGGCCTACATCCCATATTAC
                      ____________________________________________________________
consensus AGACCTCCTTCCTGTCAAGATTTTATGTGCATATGTTTGATGGCCTACATCCCATATTAC
 
. : . : . : . : . : . :
JMFF050G10+ TTTGTCATCTGGGGTGTTGAAAACATGGTGTAGAGCCACTGTCAACTCCACCACTCCTAA
JMFS009H08+ TTTGTCATCTGGGGTGTTGAAAACATGGTGTAGAGCCACTGTCAACTCCACCACTCCTAA
JMFF049J15+ TTTGTCATCTGGGGTGTTGAAAACATGGTGTAGAGCCACTGTCAACTCCACCACTCCTAA
                      ____________________________________________________________
consensus TTTGTCATCTGGGGTGTTGAAAACATGGTGTAGAGCCACTGTCAACTCCACCACTCCTAA
 
. : . : . : . : . : . :
JMFF050G10+ GCTAGCGCTTAGATGCCCTCCGGTTTTGGCTACGCTATGCACAATCTCTGCTCTTAGCTC
JMFS009H08+ GCTAGCGCTTAGATGCCCTCCGGTTTTGGCTACGCTATGCACAATCTCTGCTCTTAGCTC
JMFF049J15+ GCTAGCGCTTAGATGCCCTCCGGTTTTGGCTACGCTATGCACAATCTCTGCTCTTAGCTC
                      ____________________________________________________________
consensus GCTAGCGCTTAGATGCCCTCCGGTTTTGGCTACGCTATGCACAATCTCTGCTCTTAGCTC
 
. : . : . : . : . : . :
JMFF050G10+ TGCTGCTAATTGTTCGAGATCCGGTGTAGATAGGTTCTTCATATGAACTGGATAGTTGAT
JMFS009H08+ TGCTGCTAATTGTTCGAGATCCGGTGTAGATAGGTTCTTCATATGAACTGGATAGTTGAT
JMFF049J15+ TGCTGCTAATTGTTCGAGATCCGGTGTAGATAGGTTCTTCATATGAACTGGATAGTTGAT
                      ____________________________________________________________
consensus TGCTGCTAATTGTTCGAGATCCGGTGTAGATAGGTTCTTCATATGAACTGGATAGTTGAT
 
. : . : . : . : . : . :
JMFF050G10+ GGTGTCTAGCAATGGTGTAGGGGGTTTATCACCTGAGAAATCAATCTCCCACCCGTCTTT
JMFS009H08+ GGTGTCTAGCAATGGTGTAGGGGGTTTATCACCTGAGAAATCAATCTCCCACCCGTCTTT
JMFF049J15+ GGTGTCTAGCAATGGTGTAGGGGGTTTATCACCTGAGAAATCAATCTCCCACCCGTCTTT
                      ____________________________________________________________
consensus GGTGTCTAGCAATGGTGTAGGGGGTTTATCACCTGAGAAATCAATCTCCCACCCGTCTTT
 
. : . : . : . : . : . :
JMFF050G10+ TTCTTTTCTTATCATCATCATCTTCTTCGAATCCCCTTCTGGGCCGCCATCACAAGCTCT
JMFS009H08+ TTCTTTTCTTATCATCATCATCTTCTTCGAATCCCCTTCTGGGCCGCCATCACAAGCTCT
JMFF049J15+ TTCTTTTCTTATCATCATCATCTTCTTCGAATCCCCTTCTGGGCCGCCATCACAAGCTCT
                      ____________________________________________________________
consensus TTCTTTTCTTATCATCATCATCTTCTTCGAATCCCCTTCTGGGCCGCCATCACAAGCTCT
 
. : . : . : . : . : . :
JMFF050G10+ TATGCAAAACTTACTGCTTCCAATGTTGTTGTTAAGTCTTCTTCTAGCTGGTGTGAAGCA
JMFS009H08+ TATGCAAAACTTACTGCTTCCAATGTTGTTGTTAAGTCTTCTTCTAGCTGGTGTGAAGCA
JMFF049J15+ TATGCAAAACTTACTGCTTCCAATGTTGTTGTTAAGTCTTCTTCTAGCTGGTGTGAAGCA
                      ____________________________________________________________
consensus TATGCAAAACTTACTGCTTCCAATGTTGTTGTTAAGTCTTCTTCTAGCTGGTGTGAAGCA
 
. : . : . : . : . : . :
JMFF050G10+ AGGCTGGTGTATTCTTGTGACTAGCCCGCAAGAAACCGCCATGTCTCACAACAATTCGAT
JMFS009H08+ AGGCTGGTGTATTCTTGTGACTAGCCCGCAAGAAACCGCCATGTCTCACAACAATTCGAT
JMFF049J15+ AGGCTGGTGTATTCTTGTGACTAGCCCGCAAGAAACCGCCATGTCTCACAACAATTCGAT
                      ____________________________________________________________
consensus AGGCTGGTGTATTCTTGTGACTAGCCCGCAAGAAACCGCCATGTCTCACAACAATTCGAT
 
. : . : . : . : . : . :
JMFF050G10+ CAGCCTCAAACCTCAATCTCAGAGAATTTAGCCTTTAGGCTTTGAACAAGAAGCT
JMFS009H08+ CAGCCTCAAACCTCAATCTCAGAGAATTTAGCCTTTAGGCTTTGAA
JMFF049J15+ CAGCCTCAAACCTCAATCTCAGAGAATTTAGCCTTTAGGCTTTGAACAAGAAGCTAGGTC
                      ____________________________________________________________
consensus CAGCCTCAAACCTCAATCTCAGAGAATTTAGCCTTTAGGCTTTGAACAAGAAGCTAGGTC