Contig 000278:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049J15Sequence648000278 (3)ref|XP_011099963.1|1e-84PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [S
JMFF050G10Sequence613000278 (3)ref|XP_011099963.1|8e-74PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [S632021342gb|ABV02017.1|1e-1001-deoxy-D-xylulose-5-phosphate synthase [Nicotiana langsdorffii x Nicotiana san
JMFS009H08Sequence614000278 (3)ref|XP_011099963.1|1e-74PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [S

Alignment

This contig is upended


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JMFF050G10+                                                       CGAAAGCATCATACGT
JMFS009H08+                                                   ACACCGAAAGCATCATACGT
JMFF049J15+                       AGCTGAAATGCTGGTGAACTGTGGCCTNACACCGAAAGCATCATACGT
                      ____________________________________________________________
consensus                         AGCTGAAATGCTGGTGAACTGTGGCCTNACACCGAAAGCATCATACGT
 
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JMFF050G10+           GCTCTCGTCCCG-TTTGGAAAGCCTGCTAGTCCTGAAGTCTTCCTTATGGTGTGCATTTA
JMFS009H08+           GCTCTCGTCCCG-TTTGGAAAGCCTGCTAGTCCTGAAGTCTTCCTTATGGTGTGCATTTT
JMFF049J15+           GCTCTCGTCCCGTTTTGGAAAGCCTGCTAGTCCTGAAGTCTTCCTTATGGTGTGCATTTT
                      ____________________________________________________________
consensus             GCTCTCGTCCCG-TTTGGAAAGCCTGCTAGTCCTGAAGTCTTCCTTATGGTGTGCATTTT
 
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JMFF050G10+           NGACCTCCTTCCTGTCAAGATTTTATGTGCATATGTTTGATGGCCTACATCCCATATTAC
JMFS009H08+           AGACCTCCTTCCTGTCAAGATTTTATGTGCATATGTTTGATGGCCTACATCCCATATTAC
JMFF049J15+           AGACCTCCTTCCTGTCAAGATTTTATGTGCATATGTTTGATGGCCTACATCCCATATTAC
                      ____________________________________________________________
consensus             AGACCTCCTTCCTGTCAAGATTTTATGTGCATATGTTTGATGGCCTACATCCCATATTAC
 
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JMFF050G10+           TTTGTCATCTGGGGTGTTGAAAACATGGTGTAGAGCCACTGTCAACTCCACCACTCCTAA
JMFS009H08+           TTTGTCATCTGGGGTGTTGAAAACATGGTGTAGAGCCACTGTCAACTCCACCACTCCTAA
JMFF049J15+           TTTGTCATCTGGGGTGTTGAAAACATGGTGTAGAGCCACTGTCAACTCCACCACTCCTAA
                      ____________________________________________________________
consensus             TTTGTCATCTGGGGTGTTGAAAACATGGTGTAGAGCCACTGTCAACTCCACCACTCCTAA
 
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JMFF050G10+           GCTAGCGCTTAGATGCCCTCCGGTTTTGGCTACGCTATGCACAATCTCTGCTCTTAGCTC
JMFS009H08+           GCTAGCGCTTAGATGCCCTCCGGTTTTGGCTACGCTATGCACAATCTCTGCTCTTAGCTC
JMFF049J15+           GCTAGCGCTTAGATGCCCTCCGGTTTTGGCTACGCTATGCACAATCTCTGCTCTTAGCTC
                      ____________________________________________________________
consensus             GCTAGCGCTTAGATGCCCTCCGGTTTTGGCTACGCTATGCACAATCTCTGCTCTTAGCTC
 
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JMFF050G10+           TGCTGCTAATTGTTCGAGATCCGGTGTAGATAGGTTCTTCATATGAACTGGATAGTTGAT
JMFS009H08+           TGCTGCTAATTGTTCGAGATCCGGTGTAGATAGGTTCTTCATATGAACTGGATAGTTGAT
JMFF049J15+           TGCTGCTAATTGTTCGAGATCCGGTGTAGATAGGTTCTTCATATGAACTGGATAGTTGAT
                      ____________________________________________________________
consensus             TGCTGCTAATTGTTCGAGATCCGGTGTAGATAGGTTCTTCATATGAACTGGATAGTTGAT
 
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JMFF050G10+           GGTGTCTAGCAATGGTGTAGGGGGTTTATCACCTGAGAAATCAATCTCCCACCCGTCTTT
JMFS009H08+           GGTGTCTAGCAATGGTGTAGGGGGTTTATCACCTGAGAAATCAATCTCCCACCCGTCTTT
JMFF049J15+           GGTGTCTAGCAATGGTGTAGGGGGTTTATCACCTGAGAAATCAATCTCCCACCCGTCTTT
                      ____________________________________________________________
consensus             GGTGTCTAGCAATGGTGTAGGGGGTTTATCACCTGAGAAATCAATCTCCCACCCGTCTTT
 
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JMFF050G10+           TTCTTTTCTTATCATCATCATCTTCTTCGAATCCCCTTCTGGGCCGCCATCACAAGCTCT
JMFS009H08+           TTCTTTTCTTATCATCATCATCTTCTTCGAATCCCCTTCTGGGCCGCCATCACAAGCTCT
JMFF049J15+           TTCTTTTCTTATCATCATCATCTTCTTCGAATCCCCTTCTGGGCCGCCATCACAAGCTCT
                      ____________________________________________________________
consensus             TTCTTTTCTTATCATCATCATCTTCTTCGAATCCCCTTCTGGGCCGCCATCACAAGCTCT
 
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JMFF050G10+           TATGCAAAACTTACTGCTTCCAATGTTGTTGTTAAGTCTTCTTCTAGCTGGTGTGAAGCA
JMFS009H08+           TATGCAAAACTTACTGCTTCCAATGTTGTTGTTAAGTCTTCTTCTAGCTGGTGTGAAGCA
JMFF049J15+           TATGCAAAACTTACTGCTTCCAATGTTGTTGTTAAGTCTTCTTCTAGCTGGTGTGAAGCA
                      ____________________________________________________________
consensus             TATGCAAAACTTACTGCTTCCAATGTTGTTGTTAAGTCTTCTTCTAGCTGGTGTGAAGCA
 
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JMFF050G10+           AGGCTGGTGTATTCTTGTGACTAGCCCGCAAGAAACCGCCATGTCTCACAACAATTCGAT
JMFS009H08+           AGGCTGGTGTATTCTTGTGACTAGCCCGCAAGAAACCGCCATGTCTCACAACAATTCGAT
JMFF049J15+           AGGCTGGTGTATTCTTGTGACTAGCCCGCAAGAAACCGCCATGTCTCACAACAATTCGAT
                      ____________________________________________________________
consensus             AGGCTGGTGTATTCTTGTGACTAGCCCGCAAGAAACCGCCATGTCTCACAACAATTCGAT
 
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JMFF050G10+           CAGCCTCAAACCTCAATCTCAGAGAATTTAGCCTTTAGGCTTTGAACAAGAAGCT     
JMFS009H08+           CAGCCTCAAACCTCAATCTCAGAGAATTTAGCCTTTAGGCTTTGAA              
JMFF049J15+           CAGCCTCAAACCTCAATCTCAGAGAATTTAGCCTTTAGGCTTTGAACAAGAAGCTAGGTC
                      ____________________________________________________________
consensus             CAGCCTCAAACCTCAATCTCAGAGAATTTAGCCTTTAGGCTTTGAACAAGAAGCTAGGTC