Contig 000277:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041A13Sequence516000277 (3)ref|XP_008342227.1|5e-26PREDICTED: exopolygalacturonase clone GBGA483-like [Malus domestica]310002727 (4)gb|KCW46857.1|2e-14hypothetical protein EUGRSUZ_K00661 [Eucalyptus grandis]
JMFF049I09Sequence484000277 (3)ref|XP_008342227.1|9e-25PREDICTED: exopolygalacturonase clone GBGA483-like [Malus domestica]558002727 (4)gb|KCW46857.1|7e-19hypothetical protein EUGRSUZ_K00661 [Eucalyptus grandis]
JMFS046B10Sequence621000277 (3)ref|XP_008342227.1|6e-40PREDICTED: exopolygalacturonase clone GBGA483-like [Malus domestica]

Alignment

This contig is upended


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JMFS046B10+ CTCAATGTT
                      ____________________________________________________________
consensus CTCAATGTT
 
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JMFS046B10+ AGGTTCTTGGCCTGTATCACATTCATGTGGAAAAACTTGCTGTCCACCGACGTTACTCCT
                      ____________________________________________________________
consensus AGGTTCTTGGCCTGTATCACATTCATGTGGAAAAACTTGCTGTCCACCGACGTTACTCCT
 
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JMFS046B10+ TTCACCACCCCGTTCGTCAACGTACCAAAGTTGAGGTTAATGGGGAGGTTTTTACAGTTT
                      ____________________________________________________________
consensus TTCACCACCCCGTTCGTCAACGTACCAAAGTTGAGGTTAATGGGGAGGTTTTTACAGTTT
 
. : . : . : . : . : . :
JMFF041A13+ TTACAGTTGTTTATCTTCCAGGCGGCGGAACCCGGACCGTGGAAA
JMFS046B10+ CCGTTGAAATTCTTGTTACAGTTGTTTATCTTCCAGGCGGCGGAACCCCGACCGTCGAAA
JMFF049I09+ AA
                      ____________________________________________________________
consensus CCGTTGAAATTCTTGTTACAGTTGTTTATCTTCCAGGCGGCGGAACCCGGACCGTGGAAA
 
. : . : . : . : . : . :
JMFF041A13+ GTGCCGCCGGTGACCGTCAAGTCTTTAACCATGCTGAACAAAATCCATCCGTGTTTTGTT
JMFS046B10+ GTGCCGCCGGTGACCGTCAAGTCTTTAACCATGCTGAACAAAATCCATTCGTCTTTTGTT
JMFF049I09+ GTGCCGCCGGTGACCGTCAAGTCTTTAACCATGCTGAACAAAATCCATCCGTCTTTTGTT
                      ____________________________________________________________
consensus GTGCCGCCGGTGACCGTCAAGTCTTTAACCATGCTGAACAAAATCCATCCGTCTTTTGTT
 
. : . : . : . : . : . :
JMFF041A13+ TTGAACGCAGTGGGGTGGGTTGGCGCGATAAAAGTGGCGTCTCCCGCATCAAATGTTATG
JMFS046B10+ TTGAACGCAGTGGGGTCGGTTGGCGCGATAAAAGTGGCGTCTCCCGCATCAAATGTTATG
JMFF049I09+ TTGAACGCAGTGGGGTCGGTTGGCGCGATAAAAGTGGCGTCTCCCGCATCAAATGTTATG
                      ____________________________________________________________
consensus TTGAACGCAGTGGGGTCGGTTGGCGCGATAAAAGTGGCGTCTCCCGCATCAAATGTTATG
 
. : . : . : . : . : . :
JMFF041A13+ GCACTGTTACAAGGACCTAGAAACCCAATCTGAGCCACCATATAGTTGCCGGCCGGAACT
JMFS046B10+ GCACTCTTACAAGGACCTAGAAACCCAATCTGACCCACCATATACTTGCCGGCCGGAACT
JMFF049I09+ GCACTCTTACAAGGACCTAGAAACCCAATCTGACCCACCATATACTTGCCGGCCGGAACT
                      ____________________________________________________________
consensus GCACTCTTACAAGGACCTAGAAACCCAATCTGACCCACCATATACTTGCCGGCCGGAACT
 
. : . : . : . : . : . :
JMFF041A13+ TTCAGCGTGCTCGGCGCCGCCGGTTTGCATACCTCACCCCAAGGTTTCTTAAAAGCCGGA
JMFS046B10+ TTCAGCGTGCTCGGCGCTGCCGCTTTGCATACCTCACCCCAAGCTTTCTTAAAAGCCGGA
JMFF049I09+ TTCAGCGTGCTCGGCGCCGCCGCTTTGCATACCTCACCCCAAGCTTTCTTAAAAGCCGGA
                      ____________________________________________________________
consensus TTCAGCGTGCTCGGCGCCGCCGCTTTGCATACCTCACCCCAAGCTTTCTTAAAAGCCGGA
 
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JMFF041A13+ GCATCATGGCGCTTCCCGTCGCCTTTTGCACCAGATTTTTTAACGCTAACTTCAACACCC
JMFS046B10+ GCATCATCGCACTTCCCGTCGCCTTTTGCACCAGATTTTTTAACGCTAACTTCAACACCC
JMFF049I09+ GCATCATCGCACTTCCCGTCGCCTTTTGCACCAGATTTTTTAACGCTAACTTCAACACCC
                      ____________________________________________________________
consensus GCATCATCGCACTTCCCGTCGCCTTTTGCACCAGATTTTTTAACGCTAACTTCAACACCC
 
. : . : . : . : . : . :
JMFF041A13+ TGTACTGTTGCTACAAGATATGCCACATAGAAAAAAATCAATGCAGCGTGAATCACCTTG
JMFS046B10+ TGCACTGTTGCTACAAGATATGCCACATAGAAAAAAATCAATGCAGCTTGAATCACCTTG
JMFF049I09+ TGTACTGTTGCTACAAGATATGCCACATAGAAAAAAATCAATGCAGCTTGAATCACCTTG
                      ____________________________________________________________
consensus TGTACTGTTGCTACAAGATATGCCACATAGAAAAAAATCAATGCAGCTTGAATCACCTTG
 
. : . : . : . : . : . :
JMFF041A13+ GAACCCATC
JMFS046B10+ GAACCCATC
JMFF049I09+ GAACCCATCCTGTTAATGTAATTTTTTTTTTTTAATGTAATTTTTTTTTTTTTTTTAGAT
                      ____________________________________________________________
consensus GAACCCATCCTGTTAATGTAATTTTTTTTTTTTAATGTAATTTTTTTTTTTTTTTTAGAT
 
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JMFF049I09+ TTTTTAATGTAAXXXXXXXXXXXXXXXXXXAGATTTTTTGTTTTATTGGTTGAAATCCAG
                      ____________________________________________________________
consensus TTTTTAATGTAANNNNNNNNNNNNNNNNNNAGATTTTTTGTTTTATTGGTTGAAATCCAG