Contig 000277:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041A13Sequence516000277 (3)ref|XP_008342227.1|5e-26PREDICTED: exopolygalacturonase clone GBGA483-like [Malus domestica]310002727 (4)gb|KCW46857.1|2e-14hypothetical protein EUGRSUZ_K00661 [Eucalyptus grandis]
JMFF049I09Sequence484000277 (3)ref|XP_008342227.1|9e-25PREDICTED: exopolygalacturonase clone GBGA483-like [Malus domestica]558002727 (4)gb|KCW46857.1|7e-19hypothetical protein EUGRSUZ_K00661 [Eucalyptus grandis]
JMFS046B10Sequence621000277 (3)ref|XP_008342227.1|6e-40PREDICTED: exopolygalacturonase clone GBGA483-like [Malus domestica]

Alignment

This contig is upended


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JMFS046B10+                                                              CTCAATGTT
                      ____________________________________________________________
consensus                                                                CTCAATGTT
 
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JMFS046B10+           AGGTTCTTGGCCTGTATCACATTCATGTGGAAAAACTTGCTGTCCACCGACGTTACTCCT
                      ____________________________________________________________
consensus             AGGTTCTTGGCCTGTATCACATTCATGTGGAAAAACTTGCTGTCCACCGACGTTACTCCT
 
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JMFS046B10+           TTCACCACCCCGTTCGTCAACGTACCAAAGTTGAGGTTAATGGGGAGGTTTTTACAGTTT
                      ____________________________________________________________
consensus             TTCACCACCCCGTTCGTCAACGTACCAAAGTTGAGGTTAATGGGGAGGTTTTTACAGTTT
 
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JMFF041A13+                          TTACAGTTGTTTATCTTCCAGGCGGCGGAACCCGGACCGTGGAAA
JMFS046B10+           CCGTTGAAATTCTTGTTACAGTTGTTTATCTTCCAGGCGGCGGAACCCCGACCGTCGAAA
JMFF049I09+                                                                     AA
                      ____________________________________________________________
consensus             CCGTTGAAATTCTTGTTACAGTTGTTTATCTTCCAGGCGGCGGAACCCGGACCGTGGAAA
 
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JMFF041A13+           GTGCCGCCGGTGACCGTCAAGTCTTTAACCATGCTGAACAAAATCCATCCGTGTTTTGTT
JMFS046B10+           GTGCCGCCGGTGACCGTCAAGTCTTTAACCATGCTGAACAAAATCCATTCGTCTTTTGTT
JMFF049I09+           GTGCCGCCGGTGACCGTCAAGTCTTTAACCATGCTGAACAAAATCCATCCGTCTTTTGTT
                      ____________________________________________________________
consensus             GTGCCGCCGGTGACCGTCAAGTCTTTAACCATGCTGAACAAAATCCATCCGTCTTTTGTT
 
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JMFF041A13+           TTGAACGCAGTGGGGTGGGTTGGCGCGATAAAAGTGGCGTCTCCCGCATCAAATGTTATG
JMFS046B10+           TTGAACGCAGTGGGGTCGGTTGGCGCGATAAAAGTGGCGTCTCCCGCATCAAATGTTATG
JMFF049I09+           TTGAACGCAGTGGGGTCGGTTGGCGCGATAAAAGTGGCGTCTCCCGCATCAAATGTTATG
                      ____________________________________________________________
consensus             TTGAACGCAGTGGGGTCGGTTGGCGCGATAAAAGTGGCGTCTCCCGCATCAAATGTTATG
 
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JMFF041A13+           GCACTGTTACAAGGACCTAGAAACCCAATCTGAGCCACCATATAGTTGCCGGCCGGAACT
JMFS046B10+           GCACTCTTACAAGGACCTAGAAACCCAATCTGACCCACCATATACTTGCCGGCCGGAACT
JMFF049I09+           GCACTCTTACAAGGACCTAGAAACCCAATCTGACCCACCATATACTTGCCGGCCGGAACT
                      ____________________________________________________________
consensus             GCACTCTTACAAGGACCTAGAAACCCAATCTGACCCACCATATACTTGCCGGCCGGAACT
 
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JMFF041A13+           TTCAGCGTGCTCGGCGCCGCCGGTTTGCATACCTCACCCCAAGGTTTCTTAAAAGCCGGA
JMFS046B10+           TTCAGCGTGCTCGGCGCTGCCGCTTTGCATACCTCACCCCAAGCTTTCTTAAAAGCCGGA
JMFF049I09+           TTCAGCGTGCTCGGCGCCGCCGCTTTGCATACCTCACCCCAAGCTTTCTTAAAAGCCGGA
                      ____________________________________________________________
consensus             TTCAGCGTGCTCGGCGCCGCCGCTTTGCATACCTCACCCCAAGCTTTCTTAAAAGCCGGA
 
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JMFF041A13+           GCATCATGGCGCTTCCCGTCGCCTTTTGCACCAGATTTTTTAACGCTAACTTCAACACCC
JMFS046B10+           GCATCATCGCACTTCCCGTCGCCTTTTGCACCAGATTTTTTAACGCTAACTTCAACACCC
JMFF049I09+           GCATCATCGCACTTCCCGTCGCCTTTTGCACCAGATTTTTTAACGCTAACTTCAACACCC
                      ____________________________________________________________
consensus             GCATCATCGCACTTCCCGTCGCCTTTTGCACCAGATTTTTTAACGCTAACTTCAACACCC
 
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JMFF041A13+           TGTACTGTTGCTACAAGATATGCCACATAGAAAAAAATCAATGCAGCGTGAATCACCTTG
JMFS046B10+           TGCACTGTTGCTACAAGATATGCCACATAGAAAAAAATCAATGCAGCTTGAATCACCTTG
JMFF049I09+           TGTACTGTTGCTACAAGATATGCCACATAGAAAAAAATCAATGCAGCTTGAATCACCTTG
                      ____________________________________________________________
consensus             TGTACTGTTGCTACAAGATATGCCACATAGAAAAAAATCAATGCAGCTTGAATCACCTTG
 
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JMFF041A13+           GAACCCATC                                                   
JMFS046B10+           GAACCCATC                                                   
JMFF049I09+           GAACCCATCCTGTTAATGTAATTTTTTTTTTTTAATGTAATTTTTTTTTTTTTTTTAGAT
                      ____________________________________________________________
consensus             GAACCCATCCTGTTAATGTAATTTTTTTTTTTTAATGTAATTTTTTTTTTTTTTTTAGAT
 
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JMFF049I09+           TTTTTAATGTAAXXXXXXXXXXXXXXXXXXAGATTTTTTGTTTTATTGGTTGAAATCCAG
                      ____________________________________________________________
consensus             TTTTTAATGTAANNNNNNNNNNNNNNNNNNAGATTTTTTGTTTTATTGGTTGAAATCCAG