Contig 000276:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001A02Sequence552000276 (3)ref|XP_010327242.1|1e-42PREDICTED: polyadenylate-binding protein RBP45B-like isoform X3 [Solanum lycope773012452 (3)ref|XP_004153241.1|5e-55PREDICTED: polyadenylate-binding protein RBP45-like, partial [Cucumis sativus]
JMFF046I02Sequence599000276 (3)ref|XP_010327242.1|1e-54PREDICTED: polyadenylate-binding protein RBP45B-like isoform X3 [Solanum lycope541012452 (3)
JMFF048P22Sequence448000276 (3)ref|XP_009631415.1|1e-13PREDICTED: polyadenylate-binding protein RBP45-like isoform X1 [Nicotiana tomen444012452 (3)

Alignment

This contig is upended


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JMFF046I02+                                       AACAAAAATAGTGTATTCAGGAGAATTGTCCG
                      ____________________________________________________________
consensus                                         AACAAAAATAGTGTATTCAGGAGAATTGTCCG
 
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JMFF001A02+                         GAACCTAGAGAAGCCCAGTTAAGTCTGAAGTTCTGCTGAGCATTAG
JMFF046I02+           AGCGCTTTTCTCCTGAACCTAGAGAAGCCCAGTTAAGTCTGAAGTTCTGCTGAGCATTAG
                      ____________________________________________________________
consensus             AGCGCTTTTCTCCTGAACCTAGAGAAGCCCAGTTAAGTCTGAAGTTCTGCTGAGCATTAG
 
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JMFF001A02+           GCATTGGCGTGCCATTATAGGTCTGTAGATTCTTTTCTGCAGCTGCATGATTCATAAACT
JMFF046I02+           GCATTGGCGTGCCATTATAGGTCTGTAGATTCTTTTCTGCAGCTGCATGATTCATAAACT
                      ____________________________________________________________
consensus             GCATTGGCGTGCCATTATAGGTCTGTAGATTCTTTTCTGCAGCTGCATGATTCATAAACT
 
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JMFF001A02+           CAATAAAGCCATACCCCTCTGATTGTGAGGTTTGCTTGTTACGAATAACTTTAGCAGAGA
JMFF046I02+           CAATAAAGCCATACCCCTCTGATTGTGAGGTTTGCTTGTTACGAATAACTTTAGCAGAGA
JMFF048P22+                                               TGTTACGAATAACTTTAGCAGAGA
                      ____________________________________________________________
consensus             CAATAAAGCCATACCCCTCTGATTGTGAGGTTTGCTTGTTACGAATAACTTTAGCAGAGA
 
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JMFF001A02+           CAACCTCTCCAGAAAGGTAAAAGCATTTCATGAGGTAGTCCTCATCCATCCAGTATTGCA
JMFF046I02+           CAACCTCTCCAGAAAGGTAAAAGCATTTCATGAGGTAGTCCTCATCCATCCAGTATTGCA
JMFF048P22+           CAACCTCTCCAGAAAGGTAAAAGCATTTCATGAGGTAGTCCTCATCCATCCAGTATTGCA
                      ____________________________________________________________
consensus             CAACCTCTCCAGAAAGGTAAAAGCATTTCATGAGGTAGTCCTCATCCATCCAGTATTGCA
 
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JMFF001A02+           GATCTCCGATCCAGAGGCTGCGGATCTCATCCGCGCTGGTCGGCTGAGCAGCGGCGTTGT
JMFF046I02+           GATCTCCGATCCAGAGGCTGCGGATCTCATCCGCGCTGGTCGGCTGAGCAGCGGCGTTGT
JMFF048P22+           GATCTCCGATCCAGAGGCTGCGGATCTCATCCGCGCTGGTCGGCTGAGCAGCGGCGTTGT
                      ____________________________________________________________
consensus             GATCTCCGATCCAGAGGCTGCGGATCTCATCCGCGCTGGTCGGCTGAGCAGCGGCGTTGT
 
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JMFF001A02+           ACTGTGGTGGCTGTTGAGACTGCGGAGGAGCGACGCCCTGGGACGGCGTCTGCTGGTAAT
JMFF046I02+           ACTGTGGTGGCTGTTGAGACTGCGGAGGAGCGACGCCCTGGGACGGCGTCTGCTGGTAAT
JMFF048P22+           ACTGTGGTGGCTGTTGAGACTGCGGAGGAGCGACGCCCTGGGACGGCGTCTGCTGGTAAT
                      ____________________________________________________________
consensus             ACTGTGGTGGCTGTTGAGACTGCGGAGGAGCGACGCCCTGGGACGGCGTCTGCTGGTAAT
 
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JMFF001A02+           AGTAAGCTGATTGCTGCGGCGGCGGGACCTGGTAGGGCGGCGGCTGCTGCTGAGGCGGTG
JMFF046I02+           AGTAAGCTGATTGCTGCGGCGGCGGGACCTGGTAGGGCGGCGGCTGCTGCTGAGGCGGTG
JMFF048P22+           AGTAAGCTGATTGCTGCGGCGGCGGGACCTGGTAGGGCGGCGGCTGCTGCTGAGGCGGTG
                      ____________________________________________________________
consensus             AGTAAGCTGATTGCTGCGGCGGCGGGACCTGGTAGGGCGGCGGCTGCTGCTGAGGCGGTG
 
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JMFF001A02+           GCTGTTGCTGCATCCACTGGTGCTGCGGTTGCTGATACTGCTGGTACTGTTGCGGGGGGG
JMFF046I02+           GCTGTTGCTGCATCCACTGGTGCTGCGGTTGCTGATACTGCTGGTACTGTTGCGGGGGGG
JMFF048P22+           GCTGTTGCTGCATCCACTGGTGCTGCGGTTGCTGATGCTGCTGGTACTGTTGCGGGGGGG
                      ____________________________________________________________
consensus             GCTGTTGCTGCATCCACTGGTGCTGCGGTTGCTGATACTGCTGGTACTGTTGCGGGGGGG
 
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JMFF001A02+           CCATTGATGGAGGGACACCCGCGGATGACGGTTGCATCATCGTGTCGTTTTGGCCCTTTG
JMFF046I02+           CCATTGATGGAGGGACACCCGCGGATGACGGTTGCATCATCGTGTCGTTTTGGCCCTTTG
JMFF048P22+           CCATTGATGGAGGGACACCCGCGGATGACGGTTGCATCATCGTGTCGTTTTGGCCCTTTG
                      ____________________________________________________________
consensus             CCATTGATGGAGGGACACCCGCGGATGACGGTTGCATCATCGTGTCGTTTTGGCCCTTTG
 
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JMFF001A02+           TTTGAAGGGTTCAGGTCTGTAAGAGG                                  
JMFF046I02+           TTTGAAGGGTTCAGGTCTGTAAGAGG                                  
JMFF048P22+           TTTGAAGGGTTCAGGTCTGTAAGAGGGAGAAACAATGGAACCCTAGACGGATGGATATAT
                      ____________________________________________________________
consensus             TTTGAAGGGTTCAGGTCTGTAAGAGGGAGAAACAATGGAACCCTAGACGGATGGATATAT