Contig 000273:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048J12Sequence458000273 (5)ref|XP_009801556.1|2e-06PREDICTED: uncharacterized protein LOC104247293 isoform X1 [Nicotiana sylvestri324000273 (5)
JMFN044C14Sequence577000273 (5)ref|XP_004243435.1|53.5PREDICTED: uncharacterized protein LOC101268883 [Solanum lycopersicum]
JMSF047J16Sequence602000273 (5)ref|XP_004243435.1|52.8PREDICTED: uncharacterized protein LOC101268883 [Solanum lycopersicum]554000273 (5)ref|XP_004243435.1|52.8PREDICTED: uncharacterized protein LOC101268883 [Solanum lycopersicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044C14+                                                                      G
JMSF047J16+                                                           TTTTTTTTTTCG
                      ____________________________________________________________
consensus                                                             TTTTTTTTTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044C14+           GACTATAAATACATTATTATACTATAGACATTAAAAATTTTGTTCAAAAACGGTAGACAT
rJMSF047J16-                                                        AAAACGGTAGACAT
JMSF047J16+           GACTATAAATACATTATTATACTATAGACATTAAAAATTTTGTTCAAAAACGGTAGACAT
                      ____________________________________________________________
consensus             GACTATAAATACATTATTATACTATAGACATTAAAAATTTTGTTCAAAAACGGTAGACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF048J12-                 GCAAGACAAATAGTTACAGAATAATATTCGGTTTTACGTACAAAAATAGTGGA
JMFN044C14+           GTAATTAGCAAGACAAATAGTTACAGAATAATATTCGGTTTTACGTACAAAAATAGTGGA
rJMSF047J16-          GTAATTAGCAAGACAAATAGTTACAGAATAATATTCGGTTTTACGTACAAAAATAGTGGA
JMSF047J16+           GTAATTAGCAAGACAAATAGTTACAGAATAATATTCGGTTTTACGTACAAAAATAGTGGA
                      ____________________________________________________________
consensus             GTAATTAGCAAGACAAATAGTTACAGAATAATATTCGGTTTTACGTACAAAAATAGTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF048J12-          TAACTAAGAGCAGAAAAAGGCTCCATCAGAACTTAAATGAAGAACGGCGCCGGAGAGAAT
JMFN044C14+           TAACTAAGAGCAGAAAAAGGCTCCATCAGAACTTAAATTAAGAACGGCGCCGGAGAGAAT
rJMSF047J16-          TAACTAAGAGCAGAAAAAGGCTCCATCAGAACTTAAATTAAGAACGGCGCCGGAGAGAAT
JMSF047J16+           TAACTAAGAGCAGAAAAAGGCTCCATCAGAACTTAAATTAAGAACGGCGCCGGAGAGAAT
JMFF048J12+                                 CCATCAGAACTTAAATGAAGAACGGCGCCGGAGAGAAT
                      ____________________________________________________________
consensus             TAACTAAGAGCAGAAAAAGGCTCCATCAGAACTTAAATTAAGAACGGCGCCGGAGAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF048J12-          GCCGGAATTGGGATTGGACGGGAACATTTCCGGTAATAGTCGGTTTGTTTGGATGCTCCT
JMFN044C14+           GCCGGAATTGGGATTGGACGGGAACATTTCCGGTAATAGTCGGTTTGTTTGGATGCTCCT
rJMSF047J16-          GCCGGAATTGGGATTGGACGGGAACATTTCCGGTA--AGTCGGTTTGTTTGGATGCTCCT
JMSF047J16+           GCCGGAATTGGGATTGGACGGGAACATTTCCGGTA--AGTCGGTTTGTTTGGATGCTCCT
JMFF048J12+           GCCGGAATTGGGATTGGACGGGAACATTTCCGGTAATAGTCGGTTTGTTTGGATGCTCCT
                      ____________________________________________________________
consensus             GCCGGAATTGGGATTGGACGGGAACATTTCCGGTAATAGTCGGTTTGTTTGGATGCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF048J12-          GAAACTGTCCCCGTAGATTTCGGTTTGGCTTTCACCGGCGATTTTTTTTCTGAAGACGGA
JMFN044C14+           GAAACTGTCCCCGTAGATTTCGGTTTGGCTTTCACCGGCGATTTTTTTTCTGAAGACGGA
rJMSF047J16-          GAAACTGTCCCCGTAGATTTCGGTTTGGCTTTCACCGGCGATTTTTTTTCTGAAGACGGA
JMSF047J16+           GAAACTGTCCCCGTAGATTTCGGTTTGGCTTTCACCGGCGATTTTTTTTCTGAAGACGGA
JMFF048J12+           GAAACTGTCCCCGTAGATTTCGGTTTGGCTTTCACCGGCGATTTTTTTTCTGAAGACGGA
                      ____________________________________________________________
consensus             GAAACTGTCCCCGTAGATTTCGGTTTGGCTTTCACCGGCGATTTTTTTTCTGAAGACGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF048J12-          GCCGTCCGTACACCGGCGCCGCCGCCAGAAGTTCTATCTATATAACCCCCCACCACCCCG
JMFN044C14+           GCCGTCCGTACACCGGCGCCGCCGCCAGAAGTTCTATCTATATAACCCCCCACCACCCCG
rJMSF047J16-          GCCGTCCGTACACCGGCGCCGCCGCCAGAAGTTCTATCTATATAACCCCCCACCACCCCG
JMSF047J16+           GCCGTCCGTACACCGGCGCCGCCGCCAGAAGTTCTATCTATATAACCCCCCACCACCCCG
JMFF048J12+           GCCGTCCGTACACCGGCGCCGCCGCCAGAAGTTCTATCTATATAACCCCCCACCACCCCG
                      ____________________________________________________________
consensus             GCCGTCCGTACACCGGCGCCGCCGCCAGAAGTTCTATCTATATAACCCCCCACCACCCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF048J12-          TCTTCGGCGATCACCCGTAGCTTCGGTTTC                              
JMFN044C14+           TCTTCGGCGATCACCCGTAGCTTCGGTTTCCAATTCGCTGCTCTCTTAGCATTATTGACA
rJMSF047J16-          TCTTCGGCGATCACCCGTAGCTTCGGTTTCCAATTCGCTGCTCTCTTAGCATTATTGACA
JMSF047J16+           TCTTCGGCGATCACCCGTAGCTTCGGTTTCCAATTCGCTGCTCTCTTAGCATTATTGACA
JMFF048J12+           TCTTCGGCGATCACCCGTAGCTTCGGTTTCCAATTCGCTGCTCTCTTAGCATTATTGACA
                      ____________________________________________________________
consensus             TCTTCGGCGATCACCCGTAGCTTCGGTTTCCAATTCGCTGCTCTCTTAGCATTATTGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044C14+           GTACTCCTCGTACTTCTCCTCGGCGGGATGCTATCGGCCTCGTCCGGTTGCTTCCTCGAC
rJMSF047J16-          GTACTCCTCGTACTTCTCCTCGGCGGGATGCTATCGGCCTCGTCCGGTTGCTTCCTCGAC
JMSF047J16+           GTACTCCTCGTACTTCTCCTCGGCGGGATGCTATCGGCCTCGTCCGGTTGCTTCCTCGAC
JMFF048J12+           GTACTCCTCGTACTTCTCCTCGGCGGGATGCTATCGGCCTCGTCCGGTTGCTTCCTCGAC
                      ____________________________________________________________
consensus             GTACTCCTCGTACTTCTCCTCGGCGGGATGCTATCGGCCTCGTCCGGTTGCTTCCTCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044C14+           GTCTCGGCCGTCGGAGCAATGGTTGCGCCGCCCCAACACGCCCTCAGTTTGGGGAAGAAC
rJMSF047J16-          GTCTCGGCCGTCGGAGCAATGGTTGCGCCGCCCCAACACGCCCTCAGTTTGGGGAAGAAC
JMSF047J16+           GTCTCGGCCGTCGGAGCAATGGTTGCGCCGCCCCAACACGCCCTCAGTTTGGGGAAGAAC
JMFF048J12+           GTCTCGGCCGTCGGAGCAATGGTTGCGCCGCCCCAACACGCCCTCAGTTTGGGGAAGAAC
                      ____________________________________________________________
consensus             GTCTCGGCCGTCGGAGCAATGGTTGCGCCGCCCCAACACGCCCTCAGTTTGGGGAAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044C14+           ATCGCACCAGATTCACTGAAGCAGTCTGTACTAAA                         
rJMSF047J16-          ATCGCACCAGATTCACTGAAGCAGTCTGTACTAAATACTAATCGCAAAACC         
JMSF047J16+           ATCGCACCAGATTCACTGAAGCAGTCTGTACTAAATACTAATCGCAAAACC         
JMFF048J12+           ATCGCACCAGATTCACTGAAGCAGTCTGTACTAAATACTAATCGCAAAACCGTTGAATTC
                      ____________________________________________________________
consensus             ATCGCACCAGATTCACTGAAGCAGTCTGTACTAAATACTAATCGCAAAACCGTTGAATTC