Contig 000262:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047B08Sequence486000262 (2)550009822 (2)gb|KDP23840.1|1e-54hypothetical protein JCGZ_27129 [Jatropha curcas]
JMSF047P11Sequence684000262 (2)ref|XP_009627604.1|2e-19PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Nicotiana721009822 (2)ref|XP_010313054.1|341PREDICTED: phytochromobilin synthase isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047P11+ CCGTCACTCCCTTCAATATAGAGA
                      ____________________________________________________________
consensus CCGTCACTCCCTTCAATATAGAGA
 
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JMSF047P11+ CTGCGGAGGAGCCGAATCTTTGGGGCTTCAAAAGAAAGCATTTCAAAGTTTGCTTTTTCA
                      ____________________________________________________________
consensus CTGCGGAGGAGCCGAATCTTTGGGGCTTCAAAAGAAAGCATTTCAAAGTTTGCTTTTTCA
 
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JMSF047P11+ CCCATGTCCAAGTTTGAACTGAATTTCTCCTGCAATGGAGAAGGGGACAAATGGGTATGG
                      ____________________________________________________________
consensus CCCATGTCCAAGTTTGAACTGAATTTCTCCTGCAATGGAGAAGGGGACAAATGGGTATGG
 
. : . : . : . : . : . :
JMSF047P11+ AGTTTGGTTTCTTCCAAAGCATAATGAACAAAGTTTCTGTATGTAAAAGCTGCGGCTGAG
                      ____________________________________________________________
consensus AGTTTGGTTTCTTCCAAAGCATAATGAACAAAGTTTCTGTATGTAAAAGCTGCGGCTGAG
 
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JMSF047P11+ GCTTTGTGACTTATACTCCTAATATTACAAGGTTTGAATCTTCTTTTTCTATGCAAAATG
JMFF047B08+ AAAATG
                      ____________________________________________________________
consensus GCTTTGTGACTTATACTCCTAATATTACAAGGTTTGAATCTTCTTTTTCTATGCAAAATG
 
. : . : . : . : . : . :
JMSF047P11+ GCAATAAATTTGGCACTCCCTCCACCTCTTGTTAGTGGTAGATTCAGGGGCGGAATCAAG
JMFF047B08+ GCAATAAATTTGGCACTCCCTCCACCTCTTGTTAGTGGTAGATTCAGGGGCGGAATCAAG
                      ____________________________________________________________
consensus GCAATAAATTTGGCACTCCCTCCACCTCTTGTTAGTGGTAGATTCAGGGGCGGAATCAAG
 
. : . : . : . : . : . :
JMSF047P11+ GTTGCTGACCATGAAGAAAAACATGATTCCATTGAAGAAGAAAAAGAATCCAAGAATGGA
JMFF047B08+ GTTGCTGACCATGAAGAAAAACATGATTCCATTGAAGAAGAAAAAGAATCCAAGAATGGA
                      ____________________________________________________________
consensus GTTGCTGACCATGAAGAAAAACATGATTCCATTGAAGAAGAAAAAGAATCCAAGAATGGA
 
. : . : . : . : . : . :
JMSF047P11+ AGAGGTGATTCAGAGCTCCATTTGGATAGTGCTTTGTGCTCGACCCAATGGGGAAGGCAT
JMFF047B08+ AGAGGTGATTCAGAGCTCCATTTGGATAGTGCTTTGTGCTCGACCCAATGGGGAAGGCAT
                      ____________________________________________________________
consensus AGAGGTGATTCAGAGCTCCATTTGGATAGTGCTTTGTGCTCGACCCAATGGGGAAGGCAT
 
. : . : . : . : . : . :
JMSF047P11+ AGTCAGAAGAATCTCTTATCCAAAGTATCTCCACTCCACAATTTCCTTTGTTTACCGCTG
JMFF047B08+ AGTCAGAAGAATCTCTTATCCAAAGTATCTCCACTCCACAATTTCCTTTGTTTACCGCTG
                      ____________________________________________________________
consensus AGTCAGAAGAATCTCTTATCCAAAGTATCTCCACTCCACAATTTCCTTTGTTTACCGCTG
 
. : . : . : . : . : . :
JMSF047P11+ TCCTTGCAAATGGATTTTTTGTTTTGCCCGCCAGGGTCACCACTTAATTACGCTTTCTAG
JMFF047B08+ TCCTTGCAAATGGATTTTTTGTTTTGCCCGCCAGGGTCACCACTTAATTACGCTTTCTAG
                      ____________________________________________________________
consensus TCCTTGCAAATGGATTTTTTGTTTTGCCCGCCAGGGTCACCACTTAATTACGCTTTCTAG
 
. : . : . : . : . : . :
JMSF047P11+ TCTCTGGTTTCTACCTATTTCT
JMFF047B08+ TCTCTGGTTTCTACCTATTTCTTGAAGATGCTTCTGCCTCATGGATTTAAAGATCCTAAC
                      ____________________________________________________________
consensus TCTCTGGTTTCTACCTATTTCTTGAAGATGCTTCTGCCTCATGGATTTAAAGATCCTAAC
 
. : . : . : . : . : . :
JMFF047B08+ AACCTATCGAGCTTCAATTTCAATGGTTGAAAAAGTGGGGGAAAAAATGAGGCGCTTAAA
                      ____________________________________________________________
consensus AACCTATCGAGCTTCAATTTCAATGGTTGAAAAAGTGGGGGAAAAAATGAGGCGCTTAAA
 
. : . : . : . : . : . :
JMFF047B08+ CCCTAAATTGTGCTTCAGGCCTTCATTGAAAAGAAGTTGTGGCAAGGGAGACATAATCTT
                      ____________________________________________________________
consensus CCCTAAATTGTGCTTCAGGCCTTCATTGAAAAGAAGTTGTGGCAAGGGAGACATAATCTT