Contig 000248:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006G12Sequence591000248 (6)ref|XP_006349488.1|7e-89PREDICTED: galactose oxidase-like [Solanum tuberosum]
JMFF035N01Sequence565000248 (6)ref|XP_006349488.1|3e-85PREDICTED: galactose oxidase-like [Solanum tuberosum]101016996
JMFF043L03Sequence595000248 (6)ref|XP_006349488.1|7e-89PREDICTED: galactose oxidase-like [Solanum tuberosum]592004109 (4)ref|XP_009602919.1|2e-55PREDICTED: galactose oxidase [Nicotiana tomentosiformis]
JMFF043P18Sequence645000248 (6)ref|XP_006349488.1|2e-106PREDICTED: galactose oxidase-like [Solanum tuberosum]557004109 (4)ref|XP_009602919.1|1e-68PREDICTED: galactose oxidase [Nicotiana tomentosiformis]
JMFF044F21Sequence621000248 (6)ref|XP_006349488.1|5e-94PREDICTED: galactose oxidase-like [Solanum tuberosum]167004109 (4)
JMFF044G11Sequence633000248 (6)ref|XP_006349488.1|1e-90PREDICTED: galactose oxidase-like [Solanum tuberosum]609004109 (4)ref|XP_009602919.1|1e-62PREDICTED: galactose oxidase [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF043P18+                  CAGATTGTCCAATTGCCTGTCTTCGACTTCACCGAGAAAAGGAAAATGTACGG
                      ____________________________________________________________
consensus                    CAGATTGTCCAATTGCCTGTCTTCGACTTCACCGAGAAAAGGAAAATGTACGG
 
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JMFF043P18+           CGCCGCCTNTTCTAGGCGGAAAGAACTCCACGCTCTGGGCGGTTCTGCCGCCGACGATAA
JMFF044F21+                            GGAAAGAACTCCACGCTCTGGGCGGTTCTGCCGCCGACGATAA
JMFF006G12+                                                         GCCGCCGACGATAA
JMFF043L03+                                                         GCCGCCGACGATAA
JMFF044G11+                                      CCACGCTCTGGGCGGTTCTGCCGCCGACGATAA
                      ____________________________________________________________
consensus             CGCCGCCTNTTCTAGGCGGAAAGAACTCCACGCTCTGGGCGGTTCTGCCGCCGACGATAA
 
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JMFF043P18+           TTACAGAACCGTCGGGTAATATTTGATTGGTGGCGTACCACCGGCCTTGAGAGAGCTGAA
JMFF044F21+           TTACAGAACCGTCGGGTAATATTTGATTGGTGGCGTACCACCGGCCTTGAGAGAGCTGAA
JMFF006G12+           TTACAGAACCGTCGGGTAATATTTGATTGGTGGCGTACCACCGGCCTTGAGAGAGCTGAA
JMFF035N01+           TTACAGAACCGTCGGGTAATATTTGATTGGTGGCGTACCACCGGCCTTGAGAGAGCTGAA
JMFF043L03+           TTACAGAACCGTCGGGTAATATTTGATTGGTGGCGTACCACCGGCCTTGAGAGAGCTGAA
JMFF044G11+           TTACAGAACCGTCGGGTAATATNTGATTGGTGGCGTACCACCGGCCTTGAGAGAGCTGAA
                      ____________________________________________________________
consensus             TTACAGAACCGTCGGGTAATATTTGATTGGTGGCGTACCACCGGCCTTGAGAGAGCTGAA
 
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JMFF043P18+           CGTCCTCAAGCTCTTGCCAGTCACAGAGGGAAGACGAGTTACAAGGAACGAACTTGCGGA
JMFF044F21+           CGTCCTCAAGCTCTTGCCAGTCACAGAGGGAAGACGAGTTACAAGGAACGAACTTGCGGA
JMFF006G12+           CGTCCTCAAGCTCTTGCCAGTCACAGAGGGAAGACGAGTTACAAGGAACGAACTTGCGGA
JMFF035N01+           CGTCCTCAAGCTCTTGCCAGTCACAGAGGGAAGACGAGTTACAAGGAACGAACTTGCGGA
JMFF043L03+           CGTCCTCAAGCTCTTGCCAGTCACAGAGGGAAGACGAGTTACAAGGAACGAACTTGCGGA
JMFF044G11+           CGTCCTCAAGCTCTTGCCAGTCACAGAGGGAAGACGAGTTACAAGGAACGAACTTGCGGA
                      ____________________________________________________________
consensus             CGTCCTCAAGCTCTTGCCAGTCACAGAGGGAAGACGAGTTACAAGGAACGAACTTGCGGA
 
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JMFF043P18+           ATTTGCGGAAGCCGTCGAGGTCGCCGCCGGTTTGGATGAGGGAACCGTCGGGGAGGAACT
JMFF044F21+           ATTTGCGGAAGCCGTCGAGGTCGCCGCCGGTTTGGATGAGGGAACCGTCGGGGAGGAACT
JMFF006G12+           ATTTGCGGAAGCCGTCGAGGTCGCCGCCGGTTTGGATGAGGGAACCGTCGGGGAGGAACT
JMFF035N01+           ATTTGCGGAAGCCGTCGAGGTCGCCGCCGGTTTGGATGAGGGAACCGTCGGGGAGGAACT
JMFF043L03+           ATTTGCGGAAGCCGTCGAGGTCGCCGCCGGTTTGGATGAGGGAACCGTCGGGGAGGAACT
JMFF044G11+           ATTTGCGGAAGCCGTCGAGGTCGCCGCCGGTTTGGATGAGGGAACCGTCGGGGAGGAACT
                      ____________________________________________________________
consensus             ATTTGCGGAAGCCGTCGAGGTCGCCGCCGGTTTGGATGAGGGAACCGTCGGGGAGGAACT
 
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JMFF043P18+           GGCCGGAGGAGCACCAGGTGTCGGTGAGGACGGTGAGCGGGCGGAGGGAGTTGGTGTGAA
JMFF044F21+           GGCCGGAGGAGCACCAGGTGTCGGTGAGGACGGTGAGCGGGCGGAGGGAGTTGGTGTGAA
JMFF006G12+           GGCCGGAGGAGCACCAGGTGTCGGTGAGGACGGTGAGCGGGCGGAGGGAGTTGGTGTGAA
JMFF035N01+           GGCCGGAGGAGCACCAGGTGTCGGTGAGGACGGTGAGCGGGCGGAGGGAGTTGGTGTGAA
JMFF043L03+           GGCCGGAGGAGCACCAGGTGTCGGTGAGGACGGTGAGCGGGCGGAGGGAGTTGGTGTGAA
JMFF044G11+           GGCCGGAGGAGCACCAGGTGTCGGTGAGGACGGTGAGCGGGCGGAGGGAGTTGGTGTGAA
                      ____________________________________________________________
consensus             GGCCGGAGGAGCACCAGGTGTCGGTGAGGACGGTGAGCGGGCGGAGGGAGTTGGTGTGAA
 
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JMFF043P18+           GATCGAGGAGAACAGAGTGAGCATAACAGTCAGTCTTCAAAACGGGGTCGTTTTTGTCAT
JMFF044F21+           GATCGAGGAGAACAGAGTGAGCATAACAGTCAGTCTTCAAAACGGGGTCGTTTTTGTCAT
JMFF006G12+           GATCGAGGAGAACAGAGTGAGCATAACAGTCAGTCTTCAAAACGGGGTCGTTTTTGTCAT
JMFF035N01+           GATCGAGGAGAACAGAGTGAGCATAACAGTCAGTCTTCAAAACGGGGTCGTTTTTGTCAT
JMFF043L03+           GATCGAGGAGAACAGAGTGAGCATAACAGTCAGTCTTCAAAACGGGGTCGTTTTTGTCAT
JMFF044G11+           GATCGAGGAGAACAGAGTGAGCATAACAGTCAGTCTTCAAAACGGGGTCGTTTTTGTCAT
                      ____________________________________________________________
consensus             GATCGAGGAGAACAGAGTGAGCATAACAGTCAGTCTTCAAAACGGGGTCGTTTTTGTCAT
 
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JMFF043P18+           TGCGACAGTGGTGAGCCGGGAGGCGTATCCGGGAAGGACCGATGTTTGTGCGGTCGAGGA
JMFF044F21+           TGCGACAGTGGTGAGCCGGGAGGCGTATCCGGGAAGGACCGATGTTTGTGCGGTCGAGGA
JMFF006G12+           TGCGACAGTGGTGAGCCGGGAGGCGTATCCGGGAAGGACCGATGTTTGTGCGGTCGAGGA
JMFF035N01+           TGCGACAGTGGTGAGCCGGGAGGCGTATCCGGGAAGGACCGATGTTTGTGCGGTCGAGGA
JMFF043L03+           TGCGACAGTGGTGAGCCGGGAGGCGTATCCGGGAAGGACCGATGTTTGTGCGGTCGAGGA
JMFF044G11+           TGCGACAGTGGTGAGCCGGGAGGCGTATCCGGGAAGGACCGATGTTTGTGCGGTCGAGGA
                      ____________________________________________________________
consensus             TGCGACAGTGGTGAGCCGGGAGGCGTATCCGGGAAGGACCGATGTTTGTGCGGTCGAGGA
 
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JMFF043P18+           GCACGACTGTGTTGAAGCGGGTGACGGCTGTGTGCATGGAAGCTATGCCGGCATTGGGCA
JMFF044F21+           GCACGACTGTGTTGAAGCGGGTGACGGCTGTGTGCATGGAAGCTATGCCGGCATTGGGCA
JMFF006G12+           GCACGACTGTGTTGAAGCGGGTGACGGCTGTGTGCATGGAAGCTATGCCGGCATTGGGCA
JMFF035N01+           GCACGACTGTGTTGAAGCGGGTGACGGCTGTGTGCATGGAAGCTATGCCGGCATTGGGCA
JMFF043L03+           GCACGACTGTGTTGAAGCGGGTGACGGCTGTGTGCATGGAAGCTATGCCGGCATTGGGCA
JMFF044G11+           GCACGACTGTGTTGAAGCGGGTGACGGCTGTGTGCATGGAAGCTATGCCGGCATTGGGCA
                      ____________________________________________________________
consensus             GCACGACTGTGTTGAAGCGGGTGACGGCTGTGTGCATGGAAGCTATGCCGGCATTGGGCA
 
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JMFF043P18+           CCAGAAGTTCCCACGTTCCGGGCAGGGCGGCGCGTGCGGGGTTTACAGTGGAATGGATAA
JMFF044F21+           CCAGAAGTTCCCACGTTCCGGGCAGGGCGGCGCGTGCGGGGTTTACAGTGGAATGGATAA
JMFF006G12+           CCAGAAGTTCCCACGTTCCGGGCAGGGCGGCGCGTGCGGGGTTTACAGTGGAATGGATAA
JMFF035N01+           CCAGAAGTTCCCACGTTCCGGGCAGGGCGGCGCGTGCGGGGTTTACAGTGGAATGGATAA
JMFF043L03+           CCAGAAGTTCCCACGTTCCGGGCAGGGCGGCGCGTGCGGGGTTTACAGTGGAATGGATAA
JMFF044G11+           CCAGAAGTTCCCACGTTCCGGGCAGGGCGGCGCGTGCGGGGTTTACAGTGGAATGGATAA
                      ____________________________________________________________
consensus             CCAGAAGTTCCCACGTTCCGGGCAGGGCGGCGCGTGCGGGGTTTACAGTGGAATGGATAA
 
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JMFF043P18+           GAAGAAAGAGAAGAAGGTTCGTAAGAGCCATGGCAAAGAAAGCTAACTGAAC        
JMFF044F21+           GAAGAAAGAGAAGAAGGTTCGTAAGAGCCATGGCAAAGAAAGCTAACTGAACAGACTAGA
JMFF006G12+           GAAGAAAGAGAAGAAGGTTCGTAAGAGCCATGGCAAAGAAAGCTAACTGAACAGACTAGA
JMFF035N01+           GAAGAAAGAGAAGAAGGTTCGTAAGAGCCATGGCAAAGAAAGCTAACTGAACAGACTAGA
JMFF043L03+           GAAGAAAGAGAAGAAGGTTCGTAAGAGCCATGGCAAAGAAAGCTAACTGAACAGACTAGA
JMFF044G11+           GAAGAAAGAGAAGAAGGTTCGTAAGAGCCATGGCAAAGAAAGCTAACTGAACAGACTAGA
                      ____________________________________________________________
consensus             GAAGAAAGAGAAGAAGGTTCGTAAGAGCCATGGCAAAGAAAGCTAACTGAACAGACTAGA
 
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JMFF044F21+           CTGGGAGTTGAGAGACTTTGAAAATGAGTCTTCACC                        
JMFF006G12+           CTGGGAGTTGAGAGACTTTGAAAATGAGTCTTCACC                        
JMFF035N01+           CTGGGAGTTGAGAGACTTTGAAAAT                                   
JMFF043L03+           CTGGGAGTTGAGAGACTTTGAAAATGAGTCTTCACC                        
JMFF044G11+           CTGGGAGTTGAGAGACTTTGAAAATGAGTCTTCACCAAATGGGAATATGGGATGTCGTTT
                      ____________________________________________________________
consensus             CTGGGAGTTGAGAGACTTTGAAAATGAGTCTTCACCAAATGGGAATATGGGATGTCGTTT