Contig 000241:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043J13Sequence625000241 (2)ref|XP_009760145.1|3e-20PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Nicotiana sylvestris]510007102 (3)ref|XP_003529662.1|6e-66PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Glycine max]
JMSF021A17Sequence650000241 (2)ref|XP_009760145.1|2e-41PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Nicotiana sylvestris]830007102 (3)ref|XP_006365858.1|1e-102PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF021A17+                                                        GCTCTTGCAGAGCTC
                      ____________________________________________________________
consensus                                                          GCTCTTGCAGAGCTC
 
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JMSF021A17+           AAAAATCTTCCAAACCATGTCATCTATGAACTGCCAGGCCTGAGGGTGGTCCGTGCTCCG
                      ____________________________________________________________
consensus             AAAAATCTTCCAAACCATGTCATCTATGAACTGCCAGGCCTGAGGGTGGTCCGTGCTCCG
 
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JMSF021A17+           CATCCGTCCCACAAGCCGTAATAGGGCGTCGTTCTGAATACCGCACTCGGCCAACGTCTG
JMFF043J13+                                              GAATACCGCACTCGGCCAACGTCTG
                      ____________________________________________________________
consensus             CATCCGTCCCACAAGCCGTAATAGGGCGTCGTTCTGAATACCGCACTCGGCCAACGTCTG
 
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JMSF021A17+           GTCACATTGAAGTTGCTTCCCTTTGTATATCAACCGTTGCTCGTACACCGGAATTTTGGT
JMFF043J13+           GTCACATTGAAGTTGCTTCCCTTTGTATATCAACCGTTGCTCGTACACCGGAATTTTGGT
                      ____________________________________________________________
consensus             GTCACATTGAAGTTGCTTCCCTTTGTATATCAACCGTTGCTCGTACACCGGAATTTTGGT
 
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JMSF021A17+           GCTGGTACAGATTTTATCGTGGATTGATTCCACTAAGTCGTCGGAATTGGCTCGGAGGAC
JMFF043J13+           GCTGGTACAGATTTTATCGTGGATTGATTCCACTAAGTCGTCGGAATTGGCTCGGAGGAC
                      ____________________________________________________________
consensus             GCTGGTACAGATTTTATCGTGGATTGATTCCACTAAGTCGTCGGAATTGGCTCGGAGGAC
 
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JMSF021A17+           TAGAGTACTCCCACCAGACAACGGGCGGACAAAGAATTGAAACTGACTGGAAAACATGGG
JMFF043J13+           TAGAGTACTCCCACCAGACAACGGGCGGACAAAGAATTGAAACTGACTGGAAAACATGGG
                      ____________________________________________________________
consensus             TAGAGTACTCCCACCAGACAACGGGCGGACAAAGAATTGAAACTGACTGGAAAACATGGG
 
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JMSF021A17+           CAACCGCGAAAACGAAGCGAACGCAGAGGACGCCGATGATCGGGAGGTGGAGACAGCGGC
JMFF043J13+           CAACCGCGAAAACGAAGCGAACGCAGAGGACGCCGATGATCGGGAGGTGGAGACAGCGGC
                      ____________________________________________________________
consensus             CAACCGCGAAAACGAAGCGAACGCAGAGGACGCCGATGATCGGGAGGTGGAGACAGCGGC
 
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JMSF021A17+           GGCAGAGGAGGAGCGGAGGTCGGACACCTGAGCGGAATCGGCCGCCGAGGTGGGCCCAGC
JMFF043J13+           GGCAGAGGAGGAGCGGAGGTCGGACACCTGAGCGGAATCGGCCGCCGAGGTGGGCCCAGC
                      ____________________________________________________________
consensus             GGCAGAGGAGGAGCGGAGGTCGGACACCTGAGCGGAATCGGCCGCCGAGGTGGGCCCAGC
 
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JMSF021A17+           CTGGTCCTTACGCATCCTGACGGCGGCGGGAATCAAACACTCGGCAGAGAAAGCGTCATC
JMFF043J13+           CTGGTCCTTACGCATCCAGACGGCGGCGGGAATCAAACACTCGGCAGAGAAAGCGTCATC
                      ____________________________________________________________
consensus             CTGGTCCTTACGCATCCTGACGGCGGCGGGAATCAAACACTCGGCAGAGAAAGCGTCATC
 
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JMSF021A17+           GGAATACTCATCCAGCTTGCGCTTGGCGGTGGAGGCGTCGGCGTCGGCGTCGAGGTTAGA
JMFF043J13+           GGAATACTCATCCAGCTTGCGCTTGGCGGTGGAGGCGTCGGCGTCGGCGTCGAGGTTAGA
                      ____________________________________________________________
consensus             GGAATACTCATCCAGCTTGCGCTTGGCGGTGGAGGCGTCGGCGTCGGCGTCGAGGTTAGA
 
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JMSF021A17+           TGTCATTTGGAGGAGGTGTAGAAAGGAGGTTAAAGGGTTTAAGGAACGCTCACGCCCAAG
JMFF043J13+           TGTCATTTGGAGGAGGTGTAGAAAGGAGGTTAAAGGGTTTAAGGAACGCTCACGCCCAAG
                      ____________________________________________________________
consensus             TGTCATTTGGAGGAGGTGTAGAAAGGAGGTTAAAGGGTTTAAGGAACGCTCACGCCCAAG
 
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JMSF021A17+           TCCATGGAGTCGAAACCCGACGACGATTCACTGT                          
JMFF043J13+           TCCATGGAGTCGAAACCCGACGACGATTCACTGTGAGCCCGAATGCAGTGTGCGCAAAAT
                      ____________________________________________________________
consensus             TCCATGGAGTCGAAACCCGACGACGATTCACTGTGAGCCCGAATGCAGTGTGCGCAAAAT
 
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JMFF043J13+           GTCATATGGGAAGAAAGAGAAGCTATCGTACGCTAACAGGTGGTGAAAATGACGATATAT
                      ____________________________________________________________
consensus             GTCATATGGGAAGAAAGAGAAGCTATCGTACGCTAACAGGTGGTGAAAATGACGATATAT