Contig 000239:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B06Sequence521000239 (9)ref|XP_006350415.1|68.6PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]496000239 (9)ref|XP_006350415.1|68.6PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]
JMFF043B03Sequence518000239 (9)gb|KGN62333.1|1e-12hypothetical protein Csa_2G349670 [Cucumis sativus]515000239 (9)gb|KGN62333.1|1e-12hypothetical protein Csa_2G349670 [Cucumis sativus]
JMFF049E20Sequence507000239 (9)gb|KGN62333.1|3e-12hypothetical protein Csa_2G349670 [Cucumis sativus]339000239 (9)
JMFF050B23Sequence511000239 (9)ref|XP_006350415.1|68.6PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]537000239 (9)ref|XP_006350415.1|68.6PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]
JMFN011L03Sequence460000239 (9)ref|XP_006350415.1|69.3PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E20-                                   ACCCTGGAGAGTTTTTTTTTTTTTTTTCXXXXXXX
                      ____________________________________________________________
consensus                                      ACCCTGGAGAGTTTTTTTTTTTTTTTTCNNNNNNN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E20-          XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGGCAAATGAAATTTATTAGTCATTTTAA
JMFF050B23+                                      TAAGGGGCAAATGAAATTTATTAGTCATTTNAA
rJMFF043B03-                                     TAAGGGGCAAATGAAATTTATTAGTCATTTTAA
rJMFF050B23-                                        GGGGCAAATGAAATTTATTAGTCATTTTAA
rJMFF013B06-                                                   AATTTATTAGTCATTTTAA
JMFF013B06+                                        AGGGGCAAATGAAATTTATTAGTCATTTTAA
JMFN011L03+                                       AAGGGGCAAATGAAATTTATTAGTCATTTTAA
JMFF049E20+                                       AAGGGGCAAATGAAATTTATTAGTCATTTTAA
JMFF043B03+                                      TAAGGGGCAAATGAAATTTATTAGTCATTTTAA
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGGGGCAAATGAAATTTATTAGTCATTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E20-          AAGCGGCTAGCAGGTTTTGCAAGAAAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFF050B23+           AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
rJMFF043B03-          AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
rJMFF050B23-          AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
rJMFF013B06-          AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFF013B06+           AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFN011L03+           AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFF049E20+           AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFF043B03+           AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
                      ____________________________________________________________
consensus             AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E20-          GCAAAAAGAGTGATACAGAGATGTCCAAACTAAATTGCACTGGTGGCATTCATAACCACT
JMFF050B23+           GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
rJMFF043B03-          GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
rJMFF050B23-          GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
rJMFF013B06-          GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
JMFF013B06+           GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
JMFN011L03+           GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
JMFF049E20+           GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
JMFF043B03+           GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
                      ____________________________________________________________
consensus             GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E20-          AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
JMFF050B23+           AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
rJMFF043B03-          AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
rJMFF050B23-          AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
rJMFF013B06-          AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGTAA
JMFF013B06+           AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGTAA
JMFN011L03+           AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
JMFF049E20+           AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
JMFF043B03+           AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
                      ____________________________________________________________
consensus             AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E20-          AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
JMFF050B23+           AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
rJMFF043B03-          AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
rJMFF050B23-          AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
rJMFF013B06-          AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
JMFF013B06+           AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
JMFN011L03+           AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAAGAAAGTGACTCTCGTA
JMFF049E20+           AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
JMFF043B03+           AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
                      ____________________________________________________________
consensus             AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E20-          GTTTG                                                       
JMFF050B23+           GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
rJMFF043B03-          GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
rJMFF050B23-          GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
rJMFF013B06-          GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
JMFF013B06+           GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
JMFN011L03+           GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
JMFF049E20+           GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
JMFF043B03+           GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
                      ____________________________________________________________
consensus             GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050B23+           TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
rJMFF043B03-          TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
rJMFF050B23-          TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
rJMFF013B06-          TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
JMFF013B06+           TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
JMFN011L03+           TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
JMFF049E20+           TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
JMFF043B03+           TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
                      ____________________________________________________________
consensus             TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050B23+           AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
rJMFF043B03-          AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCGATTTTCACCATTTTCGTCT
rJMFF050B23-          AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
rJMFF013B06-          AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
JMFF013B06+           AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
JMFN011L03+           AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
JMFF049E20+           AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
JMFF043B03+           AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCGATTTTCACCATTTTCGTCT
                      ____________________________________________________________
consensus             AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050B23+           CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT          
rJMFF043B03-          CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT          
rJMFF050B23-          CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT          
rJMFF013B06-          CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT          
JMFF013B06+           CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT          
JMFN011L03+           CACTTCTCC                                                   
JMFF049E20+           CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT          
JMFF043B03+           CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATATGCATATGAAT
                      ____________________________________________________________
consensus             CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATATGCATATGAAT