Contig 000239:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B06Sequence521000239 (9)ref|XP_006350415.1|68.6PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]496000239 (9)ref|XP_006350415.1|68.6PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]
JMFF043B03Sequence518000239 (9)gb|KGN62333.1|1e-12hypothetical protein Csa_2G349670 [Cucumis sativus]515000239 (9)gb|KGN62333.1|1e-12hypothetical protein Csa_2G349670 [Cucumis sativus]
JMFF049E20Sequence507000239 (9)gb|KGN62333.1|3e-12hypothetical protein Csa_2G349670 [Cucumis sativus]339000239 (9)
JMFF050B23Sequence511000239 (9)ref|XP_006350415.1|68.6PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]537000239 (9)ref|XP_006350415.1|68.6PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]
JMFN011L03Sequence460000239 (9)ref|XP_006350415.1|69.3PREDICTED: uncharacterized protein LOC102582643 [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF049E20- ACCCTGGAGAGTTTTTTTTTTTTTTTTCXXXXXXX
                      ____________________________________________________________
consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTCNNNNNNN
 
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rJMFF049E20- XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGGCAAATGAAATTTATTAGTCATTTTAA
JMFF050B23+ TAAGGGGCAAATGAAATTTATTAGTCATTTNAA
rJMFF043B03- TAAGGGGCAAATGAAATTTATTAGTCATTTTAA
rJMFF050B23- GGGGCAAATGAAATTTATTAGTCATTTTAA
rJMFF013B06- AATTTATTAGTCATTTTAA
JMFF013B06+ AGGGGCAAATGAAATTTATTAGTCATTTTAA
JMFN011L03+ AAGGGGCAAATGAAATTTATTAGTCATTTTAA
JMFF049E20+ AAGGGGCAAATGAAATTTATTAGTCATTTTAA
JMFF043B03+ TAAGGGGCAAATGAAATTTATTAGTCATTTTAA
                      ____________________________________________________________
consensus NNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGGGGCAAATGAAATTTATTAGTCATTTTAA
 
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rJMFF049E20- AAGCGGCTAGCAGGTTTTGCAAGAAAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFF050B23+ AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
rJMFF043B03- AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
rJMFF050B23- AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
rJMFF013B06- AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFF013B06+ AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFN011L03+ AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFF049E20+ AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
JMFF043B03+ AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
                      ____________________________________________________________
consensus AAGCGGCTAGCAGGTTTTGCAAGAGAACCTTCCAATACCCAAATACAGTCCAAGCTGATT
 
. : . : . : . : . : . :
rJMFF049E20- GCAAAAAGAGTGATACAGAGATGTCCAAACTAAATTGCACTGGTGGCATTCATAACCACT
JMFF050B23+ GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
rJMFF043B03- GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
rJMFF050B23- GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
rJMFF013B06- GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
JMFF013B06+ GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
JMFN011L03+ GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
JMFF049E20+ GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
JMFF043B03+ GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
                      ____________________________________________________________
consensus GCAGAAAGAGTGATACAGAGATGTCCAAACTAGATTGCACTGTTGGCATTCATAACCACT
 
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rJMFF049E20- AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
JMFF050B23+ AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
rJMFF043B03- AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
rJMFF050B23- AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
rJMFF013B06- AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGTAA
JMFF013B06+ AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGTAA
JMFN011L03+ AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
JMFF049E20+ AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
JMFF043B03+ AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
                      ____________________________________________________________
consensus AGCTTGATTTATGAAAACAAATTTTGAGTGTTCAATCCAAATGGTTCAAACAGACAGT-A
 
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rJMFF049E20- AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
JMFF050B23+ AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
rJMFF043B03- AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
rJMFF050B23- AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
rJMFF013B06- AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
JMFF013B06+ AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
JMFN011L03+ AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAAGAAAGTGACTCTCGTA
JMFF049E20+ AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
JMFF043B03+ AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
                      ____________________________________________________________
consensus AAAAACTAAAGTGCAGAAATAAAATGCAGCTCTTGGCAGCTTAGGAAAGTGACTCTCGTA
 
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rJMFF049E20- GTTTG
JMFF050B23+ GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
rJMFF043B03- GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
rJMFF050B23- GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
rJMFF013B06- GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
JMFF013B06+ GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
JMFN011L03+ GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
JMFF049E20+ GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
JMFF043B03+ GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
                      ____________________________________________________________
consensus GTTTGTTTTCTTTGATCAGCTCTTCTCTCATCCTCCTGATCTCTGCTTCCCTCTCCATTT
 
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JMFF050B23+ TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
rJMFF043B03- TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
rJMFF050B23- TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
rJMFF013B06- TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
JMFF013B06+ TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
JMFN011L03+ TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
JMFF049E20+ TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
JMFF043B03+ TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
                      ____________________________________________________________
consensus TCTCTTTCTTTTCGTCTTGGCGGAGAGCGATCCAAACATGGATTTTATCCATGGAGTGCC
 
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JMFF050B23+ AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
rJMFF043B03- AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCGATTTTCACCATTTTCGTCT
rJMFF050B23- AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
rJMFF013B06- AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
JMFF013B06+ AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
JMFN011L03+ AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
JMFF049E20+ AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
JMFF043B03+ AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCGATTTTCACCATTTTCGTCT
                      ____________________________________________________________
consensus AGAAAACGAAGGCACCCAGTGACATCGCGAAGAACGTCCCCATTTTCACCATTTTCGTCT
 
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JMFF050B23+ CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT
rJMFF043B03- CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT
rJMFF050B23- CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT
rJMFF013B06- CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT
JMFF013B06+ CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT
JMFN011L03+ CACTTCTCC
JMFF049E20+ CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATAT
JMFF043B03+ CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATATGCATATGAAT
                      ____________________________________________________________
consensus CACTTCTCCGATCTATGCACTGCCTGCTTTCTTCGAAAAAAACGAAATATGCATATGAAT