Contig 000238:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042O08Sequence645000238 (4)gb|KDO64579.1|2e-23hypothetical protein CISIN_1g028369mg [Citrus sinensis]
JMFN032H07Sequence181000238 (4)
JMFN033J01Sequence589000238 (4)ref|XP_002311516.1|3e-19high-mobility-group family protein [Populus trichocarpa] gb|EEE88883.1| high-mob
JMFN034O19Sequence626000238 (4)gb|KDO64579.1|2e-23hypothetical protein CISIN_1g028369mg [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN033J01+ ACAATTAAAATTAACCCAAAACTACAAGGACTA
                      ____________________________________________________________
consensus ACAATTAAAATTAACCCAAAACTACAAGGACTA
 
. : . : . : . : . : . :
JMFN033J01+ AAATGCAAAATCTAAGGAGAATGATTAGCACTACAGTCACTGAAGTTATTTCTTATTTCA
                      ____________________________________________________________
consensus AAATGCAAAATCTAAGGAGAATGATTAGCACTACAGTCACTGAAGTTATTTCTTATTTCA
 
. : . : . : . : . : . :
JMFN033J01+ ATCAAGCCCCAACGGGGGCTGCCACGGCCGGGTTCACCTTCGGCGGCCTGCCTCGCCCTC
JMFN034O19+ GGGCTGCCACGGCCGGGTTCACCTTCGGCGGCCTGCCTCGCCCTC
JMFF042O08+ GGGCTGCCACGGCCGGGTTCACCTTCGGCGGCCTGCCTCGCCCTC
                      ____________________________________________________________
consensus ATCAAGCCCCAACGGGGGCTGCCACGGCCGGGTTCACCTTCGGCGGCCTGCCTCGCCCTC
 
. : . : . : . : . : . :
JMFN033J01+ TCGGAGGTCCGCTGGCTGGAGGGGGAGCGGCGGCGGGAGTGGAGGACTTCGGGGGCCTTC
JMFN034O19+ TCGGAGGTCCGCTGGCTGGAGGGGGAGCGGCGGCGGGAGTGGAGGACTTCGGGGGCCTTC
JMFF042O08+ TCGGAGGTCCGCTGGCTGGAGGGGGAGCGGCGGCGGGAGTGGAGGACTTCGGGGGCCTTC
                      ____________________________________________________________
consensus TCGGAGGTCCGCTGGCTGGAGGGGGAGCGGCGGCGGGAGTGGAGGACTTCGGGGGCCTTC
 
. : . : . : . : . : . :
JMFN033J01+ CACGTTTCCGGCCAGAGCCGCCGCCGGCGGAAGCTTTCTTCATGGGCGAAACCACCGGAG
JMFN034O19+ CACGTTTCCGGCCAGAGCCGCCGCCGGCGGAAGCTTTCTTCATGGGCGAAACCACCGGAG
JMFF042O08+ CACGTTTCCGGCCAGAGCCGCCGCCGGCGGAAGCTTTCTTCATGGGCGAAACCACCGGAG
                      ____________________________________________________________
consensus CACGTTTCCGGCCAGAGCCGCCGCCGGCGGAAGCTTTCTTCATGGGCGAAACCACCGGAG
 
. : . : . : . : . : . :
JMFN033J01+ CGAACGGGTCACGCGGCTTGGGCGGCCTGCCACGAGGACGCGGCGGCGGGGGGACGTACC
JMFN034O19+ CGAACGGGTCACGCGGCTTGGGCGGCCTGCCACGAGGACGCGGCGGCGGGGGGACGTACC
JMFF042O08+ CGAACGGGTCACGCGGCTTGGGCGGCCTGCCACGAGGACGCGGTGGCGGGGGGACGTACC
                      ____________________________________________________________
consensus CGAACGGGTCACGCGGCTTGGGCGGCCTGCCACGAGGACGCGGCGGCGGGGGGACGTACC
 
. : . : . : . : . : . :
JMFN033J01+ CCGGCGGTAGAGGCGCTTTCGGCTTCGGCGGACGGCCGCGGCCCCGGCGCGGCGGCGCAT
JMFN034O19+ CCGGCGGTAGAGGCGCTTTCGGCTTCGGCGGACGGCCGCGGCCCCGGCGCGGCGGCGCAT
JMFF042O08+ CCGGCGGTAGAGGCGCTTTCGGCTTCGGCGGACGGCCGCGGCCCCGGCGCGGCGGCGCAT
                      ____________________________________________________________
consensus CCGGCGGTAGAGGCGCTTTCGGCTTCGGCGGACGGCCGCGGCCCCGGCGCGGCGGCGCAT
 
. : . : . : . : . : . :
JMFN033J01+ TTGGGTCCGGCTTCATGTAGTTGTTCTTCACCAACACCAGCTGCCCGGATTGCTTCATCT
JMFN034O19+ TTGGGTCCGGCTTCATGTAGTTGTTCTTCACCAACACCAGCTGCCCGGATTGCTTCATCT
JMFF042O08+ TTGGGTCCGGCTTCATGTAGTTGTTCTTCACCAACACCAGCTGCCCGGATTGCTTCATCT
                      ____________________________________________________________
consensus TTGGGTCCGGCTTCATGTAGTTGTTCTTCACCAACACCAGCTGCCCGGATTGCTTCATCT
 
. : . : . : . : . : . :
JMFN033J01+ TGTCGAGGTAGTGCGTCAGCAGTGTGGCGTGAGATCCCGGCAGCTCTCCGCCGTGCGCCG
JMFN034O19+ TGTCGAGGTAGTGCGTCAGCAGTGTGGCGTGAGATCCCGGCAGCTCTCCGCCGTGCGCCG
JMFF042O08+ TGTCGAGGTAGTGCGTCAGCAGTGTGGCGTGAGATCCCGGCAGCTCTCCGCCGTGCGCCG
                      ____________________________________________________________
consensus TGTCGAGGTAGTGCGTCAGCAGTGTGGCGTGAGATCCCGGCAGCTCTCCGCCGTGCGCCG
 
. : . : . : . : . : . :
JMFN033J01+ CCTCTATCTGCCTCGAAATGTCCGATTTTGTGGACCCACCCTTCTCGTTCAACTCCTCAA
JMFN034O19+ CCTCTATCTGCCTCGAAATGTCCGATTTTGTGGACCCACCCTTCTCGTTCAACTCCTCAA
JMFN032H07+ TCTCGTTCAACTCCTCAA
JMFF042O08+ CCTCTATCTGCCTCGAAATGTCCGATTTTGTGGACCCACCCTTCTCGTTCAACTCCTCAA
                      ____________________________________________________________
consensus CCTCTATCTGCCTCGAAATGTCCGATTTTGTGGACCCACCCTTCTCGTTCAACTCCTCAA
 
. : . : . : . : . : . :
JMFN033J01+ TCGCCGCCATTATCAG
JMFN034O19+ TCGCCGCCATTATCAGCTCAGGGTATTGTGGGAGAGAGGAGTTAGCCGGCTGGTCTTCGA
JMFN032H07+ TCGCCGCCATTATCAGCTCAGGGTATTGTGGGAGAGAGGAGTTAGCCGGCTGGTCTTCGA
JMFF042O08+ TCGCCGCCATTATCAGCTCAGGGTATTGTGGGAGAGAGGAGTTAGCCGGCTGGTCTTCGA
                      ____________________________________________________________
consensus TCGCCGCCATTATCAGCTCAGGGTATTGTGGGAGAGAGGAGTTAGCCGGCTGGTCTTCGA
 
. : . : . : . : . : . :
JMFN034O19+ CAGTAGCCATGATGTTACAACCTTAGAGAAAGAAACCGCGGTCAACGGTCAACGCAAGTT
JMFN032H07+ CAGTGGCCATGATGTTACAACCTTAGAGAAAGAAACCGCGGTCAACGGTCAACGCAAGTT
JMFF042O08+ CAGTGGCCATGATGTTACAACCTTAGAGAAAGAAACCGCGGTCAACGGTCAACGCAAGTT
                      ____________________________________________________________
consensus CAGTGGCCATGATGTTACAACCTTAGAGAAAGAAACCGCGGTCAACGGTCAACGCAAGTT
 
. : . : . : . : . : . :
JMFN034O19+ CTAGAGAGAGAAAAATAACGAATTTTTAGAGGATAGGG
JMFN032H07+ CTAGAGAGAGAAAAATAACGAATTTTTAGAGGATAGGG
JMFF042O08+ CTAGAGAGAGAAAAATAACGAATTTTTAGAGGATAGGGAGAAGGAGAAGAATTGGGGATC
                      ____________________________________________________________
consensus CTAGAGAGAGAAAAATAACGAATTTTTAGAGGATAGGGAGAAGGAGAAGAATTGGGGATC