Contig 000234:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041P14Sequence637000234 (2)ref|XP_009795285.1|2e-55PREDICTED: probable cyclic nucleotide-gated ion channel 14 [Nicotiana sylvestri597019158ref|XP_009780885.1|2e-50PREDICTED: probable cyclic nucleotide-gated ion channel 14 [Nicotiana sylvestri
JMFS035G04Sequence626000234 (2)ref|XP_009795285.1|1e-88PREDICTED: probable cyclic nucleotide-gated ion channel 14 [Nicotiana sylvestri

Alignment

This contig is upended


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JMFS035G04+ GATCAAAATGGGAGCTTCTAATTGCAGGTATGATGAACCATATGACAATCTGTGGGAGA
                      ____________________________________________________________
consensus GATCAAAATGGGAGCTTCTAATTGCAGGTATGATGAACCATATGACAATCTGTGGGAGA
 
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JMFS035G04+ GGCAGTGCAGCTATGGCATCGATGAAAAAATCGGATTTCAAGTAGCGCCTCGCGATCAAT
                      ____________________________________________________________
consensus GGCAGTGCAGCTATGGCATCGATGAAAAAATCGGATTTCAAGTAGCGCCTCGCGATCAAT
 
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JMFS035G04+ TCTTGATCCATTACGAGTTCTCCTCTACCAAACACCCTTGAGCTTGGAGACACATATGCA
JMFF041P14+ TCTACCAAACACCCTTGAGCTTGGAGACACATATGCA
                      ____________________________________________________________
consensus TCTTGATCCATTACGAGTTCTCCTCTACCAAACACCCTTGAGCTTGGAGACACATATGCA
 
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JMFS035G04+ GTCCTAAACTTCATAGCAACATGTAGCAGATAAAAGGCATCTGCCAGTGTTCTGAAACAG
JMFF041P14+ GTCCTAAACTTCATAGCAACATGTAGCAGATAAAAGGCATCTGCCAGTGTTCTGAAACAG
                      ____________________________________________________________
consensus GTCCTAAACTTCATAGCAACATGTAGCAGATAAAAGGCATCTGCCAGTGTTCTGAAACAG
 
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JMFS035G04+ GTCAAGATAATCCCCAATTTCAAGTCTGTTATCATACAAGATGATGATGATGATGATGAA
JMFF041P14+ GTCAAGATAATCCCCAATTTCAAGTCTGTTATCATACAAGATGATGATGATGATGATGAA
                      ____________________________________________________________
consensus GTCAAGATAATCCCCAATTTCAAGTCTGTTATCATACAAGATGATGATGATGATGATGAA
 
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JMFS035G04+ GCATCGTTCACCACTGCAGGCAGGTAGAAGAACAAGGGATCCACGAAAAGCGCAACCAAA
JMFF041P14+ GCATCGTTCACCACTGCAGGCAGGTAGAAGAACAAGGGATCCACGAAAAGCGCAACCAAA
                      ____________________________________________________________
consensus GCATCGTTCACCACTGCAGGCAGGTAGAAGAACAAGGGATCCACGAAAAGCGCAACCAAA
 
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JMFS035G04+ CAAGAGAACAAGAACACCCTATTCCACTGCAGGACAAGCTCACTCCCAGGATCAAGAATT
JMFF041P14+ CAAGAGAACAAGAACACCCTATTCCACTGCAGGACAAGCTCACTCCCAGGATCAAGAATT
                      ____________________________________________________________
consensus CAAGAGAACAAGAACACCCTATTCCACTGCAGGACAAGCTCACTCCCAGGATCAAGAATT
 
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JMFS035G04+ TTCCTGTTTCCTGACCCATAATGCTCTGGGAAAACCTTAAACTTTCCTTTCCCAGGAACC
JMFF041P14+ TTCCTGTTTCCTGACCCATAATGCTCTGGGAAAACCTTAAACTTTCCTTTCCCAGGAACC
                      ____________________________________________________________
consensus TTCCTGTTTCCTGACCCATAATGCTCTGGGAAAACCTTAAACTTTCCTTTCCCAGGAACC
 
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JMFS035G04+ CCATTTACCCTACTGATCTTCTCTCCACCACTCCTATCCTCTGCTATTATCAAACCTGCA
JMFF041P14+ CCATTTACCCTACTGATCTTCTCTCCACCACTCCTATCCTCTGCTATTATCAAACCTGCA
                      ____________________________________________________________
consensus CCATTTACCCTACTGATCTTCTCTCCACCACTCCTATCCTCTGCTATTATCAAACCTGCA
 
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JMFS035G04+ GAAGATTTATACCCAGCCACCTGTTTCTCATTCTTATCCCAGGAATTTCCAAGATTCTGT
JMFF041P14+ GAAGATTTATACCCAGCCACCTGTTTCTCATTCTTATCCCAGGAATTTCCAAGATTCTGT
                      ____________________________________________________________
consensus GAAGATTTATACCCAGCCACCTGTTTCTCATTCTTATCCCAGGAATTTCCAAGATTCTGT
 
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JMFS035G04+ TTCCCATCACTGTAAAACCTGACTACC
JMFF041P14+ TTCCCATCACTGTAAAACCTGACTACCTTCTTGGCCTCCATGAATGCTTCACAACCAGCT
                      ____________________________________________________________
consensus TTCCCATCACTGTAAAACCTGACTACCTTCTTGGCCTCCATGAATGCTTCACAACCAGCT
 
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JMFF041P14+ CAAGCAAAGCTATAAATTTTCATTGCAGAAGAGTATAAGAATCCCCAAAAGGGTGAACAC
                      ____________________________________________________________
consensus CAAGCAAAGCTATAAATTTTCATTGCAGAAGAGTATAAGAATCCCCAAAAGGGTGAACAC
 
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JMFF041P14+ TTTGGAAACTTTCCATTGCAAAAAAAGAAAAGAAACCCCCACAAATCCCACAATCAACCT
                      ____________________________________________________________
consensus TTTGGAAACTTTCCATTGCAAAAAAAGAAAAGAAACCCCCACAAATCCCACAATCAACCT