Contig 000225:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013C16Sequence542000225 (2)ref|XP_009619262.1|6e-24PREDICTED: probable E3 ubiquitin-protein ligase HIP1 isoform X2 [Nicotiana tome264009653 (3)
JMFF039L22Sequence644000225 (2)ref|XP_009771080.1|3e-32PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref712009653 (3)gb|AHW48349.1|2e-81C3HC4-type RING finger protein [Nicotiana benthamiana]

Alignment

This contig is upended


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JMFF039L22+                           TTTGACTAGAGTTTCCGATATCAGCGGGTGTAAACATAGGATGT
                      ____________________________________________________________
consensus                             TTTGACTAGAGTTTCCGATATCAGCGGGTGTAAACATAGGATGT
 
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JMFF013C16+                                                                     CT
JMFF039L22+           TGCGATATATTTCTTGGAAAAGCCCTAGAAGAAGTTGATTCATCGAAATGCGGTGAATCT
                      ____________________________________________________________
consensus             TGCGATATATTTCTTGGAAAAGCCCTAGAAGAAGTTGATTCATCGAAATGCGGTGAATCT
 
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JMFF013C16+           CTATCCATAGAAAGGGCATAATTTGCGGGATTCCCGCTTCTTGAGCTAGACGCCGCTGCA
JMFF039L22+           CTATCCATAGAAAGGGCATAATTTGCGGGATTCCCGCTTCTTGAGCTAGACGCCGCTGCA
                      ____________________________________________________________
consensus             CTATCCATAGAAAGGGCATAATTTGCGGGATTCCCGCTTCTTGAGCTAGACGCCGCTGCA
 
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JMFF013C16+           TTCCACCTAGTCTGTGAATGCCGACGCAGAGACGGGACGTGCACTACTATAGGCGGTCCT
JMFF039L22+           TTCCACCTAGTCTGTGAATGCCGACGCAGAGACGGGACGTGCACTACTATAGGCGGTCCT
                      ____________________________________________________________
consensus             TTCCACCTAGTCTGTGAATGCCGACGCAGAGACGGGACGTGCACTACTATAGGCGGTCCT
 
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JMFF013C16+           TGAGGATTTGTACTCTCGGCAATAGCGGTGGGTCTAAATTCTATAGAATTGTTGCAATGT
JMFF039L22+           TGAGGATTTGTACTCTCGGCAATAGCGGTGGGTCTAAATTCTATAGAATTGTTGCAATGT
                      ____________________________________________________________
consensus             TGAGGATTTGTACTCTCGGCAATAGCGGTGGGTCTAAATTCTATAGAATTGTTGCAATGT
 
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JMFF013C16+           AGCCTCGATGAATTCCTATATGACGAAACAGAAACGTTTCCAGGTTCAGTCTCGGCTGAA
JMFF039L22+           AGCCTCGATGAATTCCTATATGACGAAACAGAAACGTTTCCAGGTTCAGTCTCGGCTGAA
                      ____________________________________________________________
consensus             AGCCTCGATGAATTCCTATATGACGAAACAGAAACGTTTCCAGGTTCAGTCTCGGCTGAA
 
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JMFF013C16+           AACAAATTACGAGGTACAGAACCTTGTTGGTGTTGGTGTGAGGCGTTAATCCTCAAACGG
JMFF039L22+           AACAAATTACGAGGTACAGAACCTTGTTGGTGTTGGTGTGAGGCGTTAATCCTCAAACGG
                      ____________________________________________________________
consensus             AACAAATTACGAGGTACAGAACCTTGTTGGTGTTGGTGTGAGGCGTTAATCCTCAAACGG
 
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JMFF013C16+           AAATTTCTACGTGAACTTTCTGCATTCCGGGGAGCGGTTAAACCAACGGGGCTTTCAGAA
JMFF039L22+           AAATTTCTACGTGAACTTTCTGCATTCCGGGGAGCGGTTAAACCAACGGGGCTTTCAGAA
                      ____________________________________________________________
consensus             AAATTTCTACGTGAACTTTCTGCATTCCGGGGAGCGGTTAAACCAACGGGGCTTTCAGAA
 
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JMFF013C16+           GCAGCAGCATCTCCAATGCTCAGTCCGAGTCTCGGGTTTATCTGCTCGGAAAAATTAACG
JMFF039L22+           GCAGCAGCATCTCCAATGCTCAGTCCGAGTCTCGGGTTTATCTGCTCGGAAAAATTAACG
                      ____________________________________________________________
consensus             GCAGCAGCATCTCCAATGCTCAGTCCGAGTCTCGGGTTTATCTGCTCGGAAAAATTAACG
 
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JMFF013C16+           CCACTATTATTCGGTGCGGGGGAAGGAATATTAGAACTGCTCGATATGTTGTGTTGAGTA
JMFF039L22+           CCACTATTATTCGGTGCGGGGGAAGGAATATTAGAACTGCTCGATATGTTGTGTTGAGTA
                      ____________________________________________________________
consensus             CCACTATTATTCGGTGCGGGGGAAGGAATATTAGAACTGCTCGATATGTTGTGTTGAGTA
 
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JMFF013C16+           GCTGCTGTAGTATTCCAAACACTGCTCTCGGGATGCTGAAAATAACTCGAACTTCCACTT
JMFF039L22+           GCTGCTGTAGTATTCCAAACACTGCTCTCGGGATGCTGAAAATAACTCGAACTTCCACTT
                      ____________________________________________________________
consensus             GCTGCTGTAGTATTCCAAACACTGCTCTCGGGATGCTGAAAATAACTCGAACTTCCACTT