| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007J06 | Sequence | 603 | 000216 (7) | ref|XP_009608628.1| | 7e-81 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 [Nicotiana tomen | 778 | 000216 (7) | ref|XP_009608630.1| | 5e-62 | PREDICTED: zinc finger protein CONSTANS-LIKE 1-like isoform X3 [Nicotiana tomen |
| JMFF020H02 | Sequence | 586 | 000216 (7) | ref|XP_009608628.1| | 3e-68 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 [Nicotiana tomen | |||||
| JMFF031N04 | Sequence | 591 | 000216 (7) | ref|XP_009608628.1| | 6e-51 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 [Nicotiana tomen | 761 | 000216 (7) | ref|XP_009608630.1| | 6e-45 | PREDICTED: zinc finger protein CONSTANS-LIKE 1-like isoform X3 [Nicotiana tomen |
| JMFF038I02 | Sequence | 473 | 000216 (7) | ref|XP_009760889.1| | 2e-48 | PREDICTED: zinc finger protein CONSTANS-LIKE 10-like isoform X1 [Nicotiana sylv | 713 | 000216 (7) | ref|XP_009608630.1| | 2e-60 | PREDICTED: zinc finger protein CONSTANS-LIKE 1-like isoform X3 [Nicotiana tomen |
This contig is upended
. : . : . : . : . : . :
rJMFF031N04- CTGCTTTATCATATT
rJMFF007J06- CTTTATCATATT
____________________________________________________________
consensus CTGCTTTATCATATT
. : . : . : . : . : . :
rJMFF031N04- CATCAACAAACACTAATACACTATATGTACAGCCCTAGTTTGGATTACGCTTCTACTAAG
rJMFF038I02- CTATATGTACAGCCCTAGTTTGGATTACGCTTCTACTAAG
rJMFF007J06- CATCAACAAACACTAATACACTATATGTACAGCCCTAGTTTGGATTACGCTTCTACTAAG
____________________________________________________________
consensus CATCAACAAACACTAATACACTATATGTACAGCCCTAGTTTGGATTACGCTTCTACTAAG
. : . : . : . : . : . :
rJMFF031N04- ATCATTGCAGCTAATGAAAGAACAACAAACTTGCAGTTTTAAGGTCACGGTTTATAGAGC
rJMFF038I02- ATCATTGCAGCTAATGAAAGAACAACAAACTTGCAGTTTTAAGGTCACGGTTTATAGAGC
rJMFF007J06- ATCATTGCAGCTAATGAAAGAACAACAAACTTGCAGTTTTAAGGTCACGGTTTATAGAGC
____________________________________________________________
consensus ATCATTGCAGCTAATGAAAGAACAACAAACTTGCAGTTTTAAGGTCACGGTTTATAGAGC
. : . : . : . : . : . :
rJMFF031N04- AGATACCGCGTAAAGCTTAGCTTCTTCTTCTTTTTGCGTTGTACTTGTCTGTATCGCAAG
rJMFF038I02- AGATACCGCGTAAAGCTTAGCTTCTTCTTCTTTTTGCGTTGTACTTGTCTGTATCGCAAG
rJMFF007J06- AGATACCGCGTAAAGCTTAGCTTCTTCTTCTTTTTGCGTTGTACTTGTCTGTATCGCAAG
____________________________________________________________
consensus AGATACCGCGTAAAGCTTAGCTTCTTCTTCTTTTTGCGTTGTACTTGTCTGTATCGCAAG
. : . : . : . : . : . :
rJMFF031N04- ATTTCCTCGTTCCCTTGCTTCTGCAGCAGTAACTAATAATACCCTTTTTTACATTCTTCT
rJMFF038I02- ATTTCCTCGTTCCCTTGCTTCTGCAGCAGTAACTAATAATACCCTTTTTTACATTCTTCT
rJMFF007J06- ATTTCCTCGTTCCCTTGCTTCTGCAGCAGTAACTAATAATACCCTTTTTTACATTCTTCT
____________________________________________________________
consensus ATTTCCTCGTTCCCTTGCTTCTGCAGCAGTAACTAATAATACCCTTTTTTACATTCTTCT
. : . : . : . : . : . :
rJMFF031N04- TGCTAGTAGAGAGACTCAAAACAGTCAATGCTTCTTGGATGATGCATCTGCTGCTTCTTC
rJMFF038I02- TGCTAGTAGAGAGACTCAAAACAGTCAATGCTTCTTGGATGATGCATCTGCTGCTTCTTC
rJMFF007J06- TGCTAGTAGAGAGACTCAAAACAGTCAATGCTTCTTGGATGATGCATCTGCTGCTTCTTC
____________________________________________________________
consensus TGCTAGTAGAGAGACTCAAAACAGTCAATGCTTCTTGGATGATGCATCTGCTGCTTCTTC
. : . : . : . : . : . :
rJMFF031N04- TGTTCTCGCAAATCTTCCCCGGATCCTTGGCTGACTGTCAGCCAAGGCTTTCCTGCAAGC
rJMFF038I02- TGTTCTCGCAAATCTTCCCCGGATCCTTGGCTGACTGTCAGCCAAGGCTTTCCTGCAAGC
rJMFF007J06- TGTTCTCGCAAATCTTCCCCGGATCCTTGGCTGACTGTCAGCCAAGGCTTTCCTGCAAGC
____________________________________________________________
consensus TGTTCTCGCAAATCTTCCCCGGATCCTTGGCTGACTGTCAGCCAAGGCTTTCCTGCAAGC
. : . : . : . : . : . :
rJMFF031N04- ATACTTGATTTTCCTGCCAAAGTTCCTTTTGTTCCTCTTGCTCCTGTATCGGGAAAGCTT
rJMFF038I02- ATACTTGATTTTCCTGCCAAAGTTCCTTTTGTTCCTCTTGCTCCTGTATCGGGAAAGCTT
rJMFF007J06- ATACTTGATTTTCCTGCCAAAGTTCCTTTTGTTCCTCTTGCTCCTGTATCGGGAAAGCTT
____________________________________________________________
consensus ATACTTGATTTTCCTGCCAAAGTTCCTTTTGTTCCTCTTGCTCCTGTATCGGGAAAGCTT
. : . : . : . : . : . :
rJMFF031N04- CTCTTGTCGGTCTTCAGAAATGGCGCTGCTGATAATGGGCTGGTGTCCCTTTGGAGAGTG
rJMFF038I02- CTCTTGTCGGTCTTCAGAAATGGCGCTGCTGATAATGGGCTGGTGTCCCTTTGGAGAGTG
rJMFF007J06- CTCTTGTCGGTCTTCAGAAATGGCGCTGCTGATAATGGGCTGGTGTCCCTTTGGAGAGTG
JMFF007J06+ TTTGGAGAGTG
____________________________________________________________
consensus CTCTTGTCGGTCTTCAGAAATGGCGCTGCTGATAATGGGCTGGTGTCCCTTTGGAGAGTG
. : . : . : . : . : . :
rJMFF031N04- GATGAGGCTCACGTTACCGTTGCCAAGAAGTCTTTATGTCGCCTTCACTGTATGACCTCC
rJMFF038I02- GATGAGGCTCACGTTACCGTTGCCAAG-AGTCTTTATGTCGCCTTCACTGTATGACCTCC
rJMFF007J06- GATGAGGCTCACGTTACCGTTGCCAAG-AGTCTTTATGTCGCCTTCACTGTATGACCTCC
JMFF007J06+ GATGAGGCTCACGTTACCGTTGCCAAG-AGTCTTTATGTCGCCTTCACTGTATGACCTCC
____________________________________________________________
consensus GATGAGGCTCACGTTACCGTTGCCAAG-AGTCTTTATGTCGCCTTCACTGTATGACCTCC
. : . : . : . : . : . :
rJMFF031N04- TCATACCATAAACAGCGCCAAAGTCCATTCCGGGAAAAGCGAGAAAATTCGGCATCGTTG
rJMFF038I02- TCATACCATAAACAGCGCCAAAGTCCATTCCGGGAAAAGCGAGAAAATTCGGCATCGTTG
rJMFF007J06- TCATACCATAAACAGCGCCAAAGTCCATTCCGGGAAAAGCGAGAAAATTCGGCATCGTTG
JMFF007J06+ TCATACCATAAACAGCGCCAAAGTCCATTCCGGGAAAAGCGAGAAAATTCGGCATCGTTG
JMFF031N04+ CCATAAACAGCGCCAAAGTCCATTCCGGGAAAAGCGAGAAAATTCGGCATCGTTG
JMFF020H02+ AAACAGCGCCAAAGTCCATTCCGGGAAAAGCGAGAAAATTCGGCATCGTNG
____________________________________________________________
consensus TCATACCATAAACAGCGCCAAAGTCCATTCCGGGAAAAGCGAGAAAATTCGGCATCGTTG
. : . : . : . : . : . :
rJMFF031N04- GAGGCGCCCCTTGAACCCACTCCATGGAGCTCAGAGACTCCGAGCTGCCACTTTTCTGAA
rJMFF038I02- GAGGCGCCCCTTGAACCCACTCCATGGAGCTCAGAGACTCCGAGCTGCCACTTTTCTGAA
rJMFF007J06- GAGGCGCCCCTTGAACCCACTCCATGGAGCTCAGAGACTCCGAGCTGCCACTTTTCTGAA
JMFF007J06+ GAGGCGCCCCTTGAACCCACTCCATGGAGCTCAGAGACTCCGAGCTGCCACTTTTCTGAA
JMFF031N04+ GAGGCGCCCCTTGAACCCACTCCATGGAGCTCAGAGACTCCGAGCTGCCACTTTTCTGAA
JMFF020H02+ GAGGCGCCCCTTGAACCCACTCCATGGAGCTCAGAGACTCCGAGCTGCCACTTTTCTGAA
____________________________________________________________
consensus GAGGCGCCCCTTGAACCCACTCCATGGAGCTCAGAGACTCCGAGCTGCCACTTTTCTGAA
. : . : . : . : . : . :
rJMFF031N04- ACACTCCCTCGGGAGCCAAAAGTTCCTCTGCTGCCAATCTTTCGTCAGTATTAGCAATAG
rJMFF038I02- ACACTCCCTCGGGAGCCAAAAGTTCCTCTGCTGCCAATCTTTCGTCAGTATTAGCAATAG
rJMFF007J06- ACACTCCCTCGGGAGCCAAAAGTTCCTCTGCTGCCAATCTTTCGTCAGTATTAGCAATAG
JMFF007J06+ ACACTCCCTCGGGAGCCAAAAGTTCCTCTGCTGCCAATCTTTCGTCAGTATTAGCAATAG
JMFF031N04+ ACACTCCCTCGGGAGCCAAAAGTTCCTCTGCTGCCAATCTTTCGTCAGTATTAGCAATAG
JMFF020H02+ ACACTCCCTCGGGAGCCAAAAGTCCCTCTGCTGCCAATCTTTCGTCAGTATTAGCAATAG
JMFF038I02+ CTCGGGAGCCAAAAGTTCCTCTGCTGCCAATCTTTCGTCAGTATTAGCAATAG
____________________________________________________________
consensus ACACTCCCTCGGGAGCCAAAAGTTCCTCTGCTGCCAATCTTTCGTCAGTATTAGCAATAG
. : . : . : . : . : . :
rJMFF031N04- GAATCTTGACATCTAAAACTTCGGGG
rJMFF038I02- GAATCTTGACATCT
rJMFF007J06- GAATCTTGACATCTAGAACTTCGGGGCT-CCCCAAAAGATCCTTCTTG
JMFF007J06+ GAATCTTGACATCTAGAACTTCGGGGCT-CCCCAAAAGATCCTTCTTGCAATCATAGAAA
JMFF031N04+ GAATCTTGACATCTAGAACTTCGGGGCTCCCCCAAAAGATCCTTCTTGCAATCATAGAAA
JMFF020H02+ GAATCTTGACATCTAGAACTTCGGGGCT-CCCCAAAAGATCCTTCTTGCAATCATAGAAA
JMFF038I02+ GAATCTTGACATCTAGAACTTCGGGGCTCCCCCAAAAGATCCTTCTTGCAATCATAGAAA
____________________________________________________________
consensus GAATCTTGACATCTAGAACTTCGGGGCT-CCCCAAAAGATCCTTCTTGCAATCATAGAAA
. : . : . : . : . : . :
JMFF007J06+ ACGTCATTGAAGAGCTGTTCATTCTCGAATGATGATTCGATGTCTGAAATTCTGAGTCCT
JMFF031N04+ ACGTCATTGAAGAGCTGTTCATTCTCGAATGATGATTCGATGTCTGAAATTCTGAGTCCT
JMFF020H02+ ACGTCATTGAAGAGCTGTTCATTCTCGAATGATGATTCGATGTCTGAAATTCTGAGTCCT
JMFF038I02+ ACGTCATTGAAGAGCTGTTCATTCTCGAATGATGATTCGATGTCTGAAATTCTGAGTCCT
____________________________________________________________
consensus ACGTCATTGAAGAGCTGTTCATTCTCGAATGATGATTCGATGTCTGAAATTCTGAGTCCT
. : . : . : . : . : . :
JMFF007J06+ TGATGGGACATGACATCATCTCCACAAGAAATCATTGAAATGGCAGCTGTCATTGGATCA
JMFF031N04+ TGATGGGACATGACATCATCTCCACAAGAAATCATTGAAATGGCAGCTGTCATTGGATCA
JMFF020H02+ TGATGGGACATGACATCATCTCCACAAGAAATCATTGAAATGGCAGCTGTCATTGGATCA
JMFF038I02+ TGATGGGACATGACATCATCTCCACAAGAAATCATTGAAATGGCAGCTGTCATTGGATCA
____________________________________________________________
consensus TGATGGGACATGACATCATCTCCACAAGAAATCATTGAAATGGCAGCTGTCATTGGATCA
. : . : . : . : . : . :
JMFF007J06+ ATATCCAACAGTGGTTCTTCAATAAGCGGTTCTGGAACATTGAAGAGGTCCCCCTCTCCA
JMFF031N04+ ATATCCAACAGTGGTTCTTCAATAAGCGGTTCTGGAACATTGAAGAGGTCCCCCTCTCCA
JMFF020H02+ ATATCCAACAGTGGTTCTTCAATAAGCGGTTCTGGAACATTGAAGAGGTCCCCCTCTCCA
JMFF038I02+ ATATCCAACAGTGGTTCTTCAATAAGCGGTTCTGGAACATTGAAGAGGTCCCCCTCTCCA
____________________________________________________________
consensus ATATCCAACAGTGGTTCTTCAATAAGCGGTTCTGGAACATTGAAGAGGTCCCCCTCTCCA
. : . : . : . : . : . :
JMFF007J06+ CCGAGGTCATATTCTGATATAGCAGATGCCATTGGAGCATTGGGTTTCTGAGAGCAATAG
JMFF031N04+ CCGAGGTCATATTCTGATATAGCAGATGCCATTGGAGCATTGGGTTTCTGAGAGCAATAG
JMFF020H02+ CCGAGGTCATATTCTGATATAGCAGATGCCATTGGAGCATTGGGTTTCTGAGAGCAATAG
JMFF038I02+ CCGAGGTCATATTCTGATATAGCAGATGCCATTGGAGCATTGGGTTTCTGAGAGCAATAG
____________________________________________________________
consensus CCGAGGTCATATTCTGATATAGCAGATGCCATTGGAGCATTGGGTTTCTGAGAGCAATAG
. : . : . : . : . : . :
JMFF007J06+ AACTCTTCAAGCTGTTGAACTTCTTGAGGAAAGCTCGGGAAGGAAGGAAA
JMFF031N04+ AACTCTTCAAGCTGTTGAACTTCTTGAGGAAAGCTCGGGAAGGAAGGAAAGATTAGCTCA
JMFF020H02+ AACTCTTCAAGCTGTTGAACTTCTTGAGGAAAGCTCGGGAAGGAAGGAAAGATTAGCTCA
JMFF038I02+ AACTCTTCAAGCTGTTGAACTTCTTGAGGAAAGCTCGGGAAGGAAGGAAAGATTAGCTCA
____________________________________________________________
consensus AACTCTTCAAGCTGTTGAACTTCTTGAGGAAAGCTCGGGAAGGAAGGAAAGATTAGCTCA
. : . : . : . : . : . :
JMFF031N04+ GTCTCTGCATACATTTCTCTCTCTCTATATATATCTCTCTCTGGGCCAAATGAATT
JMFF020H02+ GTCTCTGCATACATTTCTCTCTCTCTATATATATCTCTCTCTGGGCCAAATGAATT
JMFF038I02+ GTCTCTGCATACATTTCTCTCTCTCTATATATATCTCTCTCTGGGCCAAATGAATTGAAT
____________________________________________________________
consensus GTCTCTGCATACATTTCTCTCTCTCTATATATATCTCTCTCTGGGCCAAATGAATTGAAT