| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008D23 | Sequence | 312 | 000212 (11) | gb|ABK94111.1| | 3e-35 | unknown [Populus trichocarpa] | |||||
| JMFF037L09 | Sequence | 252 | 000212 (11) | 767 | 000212 (11) | ref|XP_011046818.1| | 4e-76 | PREDICTED: ferritin, chloroplastic-like [Populus euphratica] | |||
| JMFF041D15 | Sequence | 312 | 000212 (11) | gb|ABK94111.1| | 3e-35 | unknown [Populus trichocarpa] | 315 | 000212 (11) | gb|ABK94111.1| | 3e-35 | unknown [Populus trichocarpa] |
| JMFN016D17 | Sequence | 610 | 000212 (11) | ref|XP_007026594.1| | 8e-53 | Ferretin 1 isoform 2, partial [Theobroma cacao] gb|EOY07096.1| Ferretin 1 isofor | |||||
| JMFN020K15 | Sequence | 582 | 000212 (11) | ref|XP_007026594.1| | 8e-70 | Ferretin 1 isoform 2, partial [Theobroma cacao] gb|EOY07096.1| Ferretin 1 isofor | |||||
| JMFN025K21 | Sequence | 601 | 000212 (11) | ref|XP_007026594.1| | 7e-50 | Ferretin 1 isoform 2, partial [Theobroma cacao] gb|EOY07096.1| Ferretin 1 isofor | |||||
| JMFN037G11 | Sequence | 589 | 000212 (11) | ref|XP_007026594.1| | 9e-50 | Ferretin 1 isoform 2, partial [Theobroma cacao] gb|EOY07096.1| Ferretin 1 isofor | |||||
| JMFN043D12 | Sequence | 589 | 000212 (11) | ref|XP_007026594.1| | 9e-50 | Ferretin 1 isoform 2, partial [Theobroma cacao] gb|EOY07096.1| Ferretin 1 isofor | |||||
| JMFS111B09 | Sequence | 616 | 000212 (11) | ref|XP_007026594.1| | 5e-57 | Ferretin 1 isoform 2, partial [Theobroma cacao] gb|EOY07096.1| Ferretin 1 isofor | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF037L09- AGAGCAAGGCCATTAC
____________________________________________________________
consensus AGAGCAAGGCCATTAC
. : . : . : . : . : . :
rJMFF037L09- AAGTTGACAACTAACTAGCCTACCTACACTACAACAATTCATCCCACACTTGATGAATAT
____________________________________________________________
consensus AAGTTGACAACTAACTAGCCTACCTACACTACAACAATTCATCCCACACTTGATGAATAT
. : . : . : . : . : . :
rJMFF037L09- TTTTTACTGATGAAACAAAACAGCAGAATTGAAGTTTCTAAGATCTAAACACATTGACAA
____________________________________________________________
consensus TTTTTACTGATGAAACAAAACAGCAGAATTGAAGTTTCTAAGATCTAAACACATTGACAA
. : . : . : . : . : . :
rJMFF037L09- GTAAAGCTCAAGCTAGCTACTACTGATATATAGTAACATAAATTATATTGCATCTTCAGA
____________________________________________________________
consensus GTAAAGCTCAAGCTAGCTACTACTGATATATAGTAACATAAATTATATTGCATCTTCAGA
. : . : . : . : . : . :
rJMFF037L09- CATCAATTATCACTTCATGCCCAGAAATCTAACAGCCCAGACTTGTTTGCACTTCATGCC
____________________________________________________________
consensus CATCAATTATCACTTCATGCCCAGAAATCTAACAGCCCAGACTTGTTTGCACTTCATGCC
. : . : . : . : . : . :
rJMFF037L09- ACCCCATTGCCATCTTAATGGAGGAGCATCTGATCAAAGTGCCAAACTCCATGTCCATTT
____________________________________________________________
consensus ACCCCATTGCCATCTTAATGGAGGAGCATCTGATCAAAGTGCCAAACTCCATGTCCATTT
. : . : . : . : . : . :
JMFF041D15+ GAAATCTTCTTAATAGCTTCAACCTGCTCC
JMFF008D23+ GAAATCTTCTTAATAGCTTCAACCTGCTCC
rJMFF041D15- GAAATCTTCTTAATAGCTTCAACCTGCTCC
rJMFF037L09- CCAACCCTTCTTAGCTGTGTAACATACTCTGAAATCTTCTTAATAGCTTCGACCTGCTCC
____________________________________________________________
consensus CCAACCCTTCTTAGCTGTGTAACATACTCTGAAATCTTCTTAATAGCTTCAACCTGCTCC
. : . : . : . : . : . :
JMFF041D15+ TCCAGAAACTCGCTCTCAATGAAATCTGTCATCTGAGGATCATTGTTTCGCTCAGCCACA
JMFF008D23+ TCCAGAAACTCGCTCTCAATGAAATCTGTCATCTGAGGATCATTGTTTCGCTCAGCCACA
rJMFF041D15- TCCAGAAACTCGCTCTCAATGAAATCTGTCATCTGAGGATCATTGTTTCGCTCAGCCACA
rJMFF037L09- TCTAGAAACTCGCCCTCGACAAAATCTGTCATCTGAGCATCATTGTTTCGCTCAGCCACA
____________________________________________________________
consensus TCCAGAAACTCGCTCTCAATGAAATCTGTCATCTGAGGATCATTGTTTCGCTCAGCCACA
. : . : . : . : . : . :
JMFF041D15+ GCATGGAGGTTGAGGAGTTTCTCATTTACTAACTTCTCCAACGACAGTGCTAGTTCCATA
JMFF008D23+ GCATGGAGGTTGAGGAGTTTCTCATTTACTAACTTCTCCAACGACAGTGCTAGTTCCATA
rJMFF041D15- GCATGGAGGTTGAGGAGTTTCTCATTTACTAACTTCTCCAACGACAGTGCTAGTTCCATA
rJMFF037L09- GCATGGAGGTTGAGGAGTTTCTCATTCACTAACTTCTCCAATGACAGTGCTAGTTCCATA
JMFN020K15+ CATTCACTAACTTCTCCAATGACAGTGCTAGTTCCATA
JMFS111B09+ TCATTCACTAACTTCTCCAACGACAGTGCTAGTTCCATA
JMFN043D12+ AGTTCCATA
JMFN037G11+ AGTTCCATA
JMFN025K21+ CTAGTTCCATA
JMFN016D17+ CCAATGACAGTGCTAGTTCCATA
____________________________________________________________
consensus GCATGGAGGTTGAGGAGTTTCTCATTTACTAACTTCTCCAACGACAGTGCTAGTTCCATA
. : . : . : . : . : . :
JMFF041D15+ GCATACAACGCATCACCCTTCTCAGCATGTTCAAATTCCGAAAGAGGTGAAAGAATAGAG
JMFF008D23+ GCATACAACGCATCACCCTTCTCAGCATGTTCAAATTCCGAAAGAGGTGAAAGAATAGAG
rJMFF041D15- GCATACAACGCATCACCCTTCTCAGCATGTTCAAATTCCGAAAGAGGTGAAAGAATAGAG
rJMFF037L09- GCATACAATGCATCACCCTTCTCAGGGTGTTCAAATTCCGAAAGAGGTGAAATAATAGAG
JMFN020K15+ GCATACAATGCATCACCCTTCTCAGGGTGTTCAAATTCCGAAAGAGGTGAAATAATAGAG
JMFS111B09+ GCATACAACGCATCACCCTTCTCAGCATGTTCAAATTCCGAAAGAGGTGAAAGAATAGAG
JMFN043D12+ GCATACAATGCATCACCCTTCTCAACATGTTCAAATTCCGAAACAGGTGAAATAATAGAG
JMFN037G11+ GCATACAATGCATCACCCTTCTCAACATGTTCAAATTCCGAAACAGGTGAAATAATAGAG
JMFN025K21+ GCATACAATGCATCACCCTTCTCAACATGTTCAAATTCCGAAACAGGTGAAATAATAGAG
JMFN016D17+ GCATACAATGCATCACCCTTCTCAACATGTTCAAATTCCGAAACAGGTGAAATAATAGAG
____________________________________________________________
consensus GCATACAATGCATCACCCTTCTCAGCATGTTCAAATTCCGAAAGAGGTGAAATAATAGAG
. : . : . : . : . : . :
JMFF041D15+ TGCAGCTTCACTTTTCCACCTCGGATGTTCTGATATTTCATTAGCTTTTCAGCATGTTCC
JMFF008D23+ TGCAGCTTCACTTTTCCACCTCGGATGTTCTGATATTTCATTAGCTTTTCAGCATGTTCC
rJMFF041D15- TGCAGCTTCACTTTTCCACCTCGGATGTTCTGATATTTCATTAGCTTTTCAGCATGTTCC
rJMFF037L09- TGCAGCTTCACTTTTCCACCTCGGATGTTCTGATATTTCATTAGCTTTTCAGCATGATCC
JMFN020K15+ TGCAGCTTCACTTTTCCACCTCGGATGTTCTGATATTTCATTAGCTTTTCAGCATGATCC
JMFS111B09+ TGCAGCTTCACTTTTCCACCTCGGATGTTCTGATATTTCATTAGCTTTTCAGCATGTTCC
JMFN043D12+ TGCAGCTTCACTTTTCCACCTCGGGTGTTCTGATATTCCATTAGCTTTTCAGCATGTTCC
JMFN037G11+ TGCAGCTTCACTTTTCCACCTCGGGTGTTCTGATATTCCATTAGCTTTTCAGCATGTTCC
JMFN025K21+ TGCAGCTTCACTTTTCCACCTCGGGTGTTCTGATATTCCATTAGCTTTTCAGCATGTTCC
JMFN016D17+ TGCAGCTTCACTTTTCCACCTCGGGTGTTCTGATATTCCATTAGCTTTTCAGCATGTTCC
____________________________________________________________
consensus TGCAGCTTCACTTTTCCACCTCGGATGTTCTGATATTTCATTAGCTTTTCAGCATGTTCC
. : . : . : . : . : . :
JMFF041D15+ CTTTCTTCTTCACTTGACTCCT
JMFF008D23+ CTTTCTTCTTCACTTGACTCCT
rJMFF041D15- CTTTCTTCTTCACTTGACTCCT
rJMFF037L09- CTTTCTTCTTCACTTGACTCCTTGAAAAACTTGGCCAGCCCTTTGAGGGCAACATTGTCT
JMFN020K15+ CTTTCTTCTTCACTTGACTCCTTGAAAAACTTGGCCAGCCCTTTGAGGGCAACATTGTCT
JMFS111B09+ CTTTCTTCTTCACTTGACTCCTTGAAAAACTTGGCCAGCCCTTTGAGGGCAACATTGTCT
JMFN043D12+ CTTTCTTCTTCACTTGACTCCTTGAAAAACTTGGCCAGTCCTTTGAGGGCAACATTGTCT
JMFN037G11+ CTTTCTTCTTCACTTGACTCCTTGAAAAACTTGGCCAGTCCTTTGAGGGCAACATTGTCT
JMFN025K21+ CTTTCTTCTTCACTTGACTCCTTGAAAAACTTGGCCAGTCCTTTGAGGGCAACATTGTCT
JMFN016D17+ CTTTCTTCTTCACTTGACTCCTTGAAAAACTTGGCCAGTCCTTTGAGGGCAACATTGTCT
____________________________________________________________
consensus CTTTCTTCTTCACTTGACTCCTTGAAAAACTTGGCCAGTCCTTTGAGGGCAACATTGTCT
. : . : . : . : . : . :
rJMFF037L09- CTATCAAAGTATGCATACATGGAGTGGTACGCATATGANGCGCTATATTCAACATTGATC
JMFN020K15+ CTATCAAAGTATGCAGACATGGAGTGGTACGCATATGAGGCGCTATATTCAACATTGATC
JMFS111B09+ CTATCAAAGTATGCATACATGGAGTGGTACGCATAAGAGGCGCTGTATTCAACATTGATC
JMFN043D12+ CTATCAAAGTATGCATACATGGAGTGGTACGCATAAGAAGCACTGTATTCAACATTGATC
JMFN037G11+ CTATCAAAGTATGCATACATGGAGTGGTACGCATAAGAAGCACTGTATTCAACATTGATC
JMFN025K21+ CTATCAAAGTATGCATACATGGAGTGGTACGCATAAGAAGCACTGTATTCAACATTGATC
JMFN016D17+ CTATCAAAGTATGCATACATGGAGTGGTACGCATAAGAAGCACTGTATTCAACATTGATC
____________________________________________________________
consensus CTATCAAAGTATGCATACATGGAGTGGTACGCATAAGAAGCGCTGTATTCAACATTGATC
. : . : . : . : . : . :
rJMFF037L09- TGCTCATTGATTGCGGCTTCGCACTCATCG
JMFN020K15+ TGCTCATTGATTGCGGCTTCGCACTCATCGGAGTACTTTTGGCGAGCAAGCGAGACCTGA
JMFS111B09+ TGCTCATTAATTGCGGCTTCACACTCATCGGAGTACTTTTGGCGCGCAATCGAGACCTGA
JMFN043D12+ TGCTCATTGATTGCGGCTTCGCACTCATCGCAGTACTTCTGGCGCGCAAGCGAGGCCTGA
JMFN037G11+ TGCTCATTGATTGCGGCTTCGCACTCATCGCAGTACTTCTGGCGCGCAAGCGAGGCCTGA
JMFN025K21+ TGCTCATTGATTGCGGCTTCGCACTCATCGCAGTACTTCTGGCGCGCAAGCGAGGCCTGA
JMFN016D17+ TGCTCATTGATTGCGGCTTCGCACTCATCGCAGTACTTCTGGCGCGCAAGCGAGGCCTGA
____________________________________________________________
consensus TGCTCATTGATTGCGGCTTCGCACTCATCGCAGTACTTCTGGCGCGCAAGCGAGGCCTGA
. : . : . : . : . : . :
JMFN020K15+ GGGGTTATGGGCACCATGAAAGCATCATTCTTGACCTCCTGAAACGGCTGAAACACAACC
JMFS111B09+ GGGGATATGGGCACCATGAAAGCATCATTCTTGACCTCCTGAAACGGCTGAAACACAACC
JMFN043D12+ GGGGTTATGGGCACCATGAAAGCATCATTCTTGACCTCCTGGAAAGGCTGAAACACAACC
JMFN037G11+ GGGGTTATGGGCACCATGAAAGCATCATTCTTGACCTCCTGGAAAGGCTGAAACACAACC
JMFN025K21+ GGGGTTATGGGCACCATGAAAGCATCATTCTTGACCTCCTGGAAAGGCTGAAACACAACC
JMFN016D17+ GGGGTTATGGGCACCATGAAAGCATCATTCTTGACCTCCTGGAAAGGCTGAAACACAACC
JMFF037L09+ GCTGAAACACAACC
____________________________________________________________
consensus GGGGTTATGGGCACCATGAAAGCATCATTCTTGACCTCCTGGAAAGGCTGAAACACAACC
. : . : . : . : . : . :
JMFN020K15+ CCAGTGAGGGGAGCATCAGCAGTCTCAGAAACAGCCGAGATCGAAAACCCAACTTTCCGT
JMFS111B09+ CCTGTGAGGGGAGCATCCGCAGTCTCAGAAACAGCGGAGATTGAAAACACAACTTTCCGA
JMFN043D12+ CCGGTGAGGGGAGCATCAGCGGTCTCAGAAACAGCCGAGATGGAAAACCCGACTTTCCGC
JMFN037G11+ CCGGTGAGGGGAGCATCAGCGGTCTCAGAAACAGCCGAGATGGAAAACCCGACTTTCCGC
JMFN025K21+ CCGGTGAGGGGAGCATCAGCGGTCTCAGAAACAGCCGAGATGGAAAACCCGACTTTCCGC
JMFN016D17+ CCGGTGAGGGGAGCATCAGCGGTCTCAGAAACAGCCGAGATGGAAAACCCGACTTTCCGC
JMFF037L09+ CCAGTGAGGGGAGCATCAGCAGTCTCAGAAACAGCCGAGATCGAAAACCCAACTTTCCGT
____________________________________________________________
consensus CCGGTGAGGGGAGCATCAGCGGTCTCAGAAACAGCCGAGATGGAAAACCCGACTTTCCGC
. : . : . : . : . : . :
JMFN020K15+ CCCGCCGGAAAAGCAAGATTCGAGACCGGAGAGACCGAAGAACCCAAACCCAACCCCGCC
JMFS111B09+ CCCGCCGGAAAAGCAAGATTCGAGACCGGAGAGACCGAAGAACCCAAACCCAACCCCGCC
JMFN043D12+ CCCGCCGGAAAAGCAAGATTCGAGACAGGGGAGACGGAAGAACCCAAACCCAAGCCCGCC
JMFN037G11+ CCCGCCGGAAAAGCAAGATTCGAGACAGGGGAGACGGAAGAACCCAAACCCAAGCCCGCC
JMFN025K21+ CCCGCCGGAAAAGCAAGATTCGAGACAGGGGAGACGGAAGAACCCAAACCCAAGCCCGCC
JMFN016D17+ CCCGCCGGAAAAGCAAGATTCGAGACAGGGGAGACGGAAGAACCCAAACCCAAGCCCGCC
JMFF037L09+ CCCGCCGGAAAAGCAAGATTCGAGACCGGAGAGACCGAAGAACCCAAACCCAACCCCGCC
____________________________________________________________
consensus CCCGCCGGAAAAGCAAGATTCGAGACAGGGGAGACGGAAGAACCCAAACCCAAGCCCGCC
. : . : . : . : . : . :
JMFN020K15+ GGAAGCAGGGCACCAGAGGGTTTGTACAAAGAAACGCCAGAAAATCCCTTCACAAACATC
JMFS111B09+ GGAATCAGGGCCCCAGAGGGTTTGTACAAAGAAACGCCAGAAAATCCCTTCACAAACATC
JMFN043D12+ CGAAGCAGAGCACCAGAAGGTTTGCACAAAGAAACGCCAGAAAATCCCTTCACAAACATC
JMFN037G11+ CGAAGCAGAGCACCAGAAGGTTTGCACAAAGAAACGCCAGAAAATCCCTTCACAAACATC
JMFN025K21+ CGAAGCAGAGCACCAGAAGGTTTGCACAAAGAAACGCCAGAAAATCCCTTCACAAACATC
JMFN016D17+ CGAAGCAGAGCACCAGAAGGTTTGCACAAAGAAACGCCAGAAAATCCCTTCACAAACATC
JMFF037L09+ GGAAGCAGGGCACCAGAGGGTTTGTACAAAGAAACGCCAGAAAATCCCTTCACAAACATC
____________________________________________________________
consensus CGAAGCAGAGCACCAGAAGGTTTGCACAAAGAAACGCCAGAAAATCCCTTCACAAACATC
. : . : . : . : . : . :
JMFN020K15+ TTT
JMFS111B09+ TTT
JMFN043D12+ TTTCTACTAGTACAAAAACACAAAGATTTGCTGTTACTAA
JMFN037G11+ TTTCTACTAGTACAAAAACACAAAGATTTGCTGTTACTAA
JMFN025K21+ TTT
JMFN016D17+ TTTCTACTAGTACAAAAACACAAAGATTTGCTGTTACTAA
JMFF037L09+ TTTTTA--AGTACAAAAGCACAAAGATTTACAGTTACTAACAGGAAATGAGAGTGGAGAT
____________________________________________________________
consensus TTTCTACTAGTACAAAAACACAAAGATTTGCTGTTACTAACAGGAAATGAGAGTGGAGAT