Contig 000211:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013D23Sequence491000211 (2)ref|NP_001275316.1|2e-23transcription factor MYB82-like [Solanum tuberosum] ref|XP_006358297.1| PREDICTE
JMFF037I18Sequence647000211 (2)ref|NP_001275316.1|4e-46transcription factor MYB82-like [Solanum tuberosum] ref|XP_006358297.1| PREDICTE665022376ref|XP_009593348.1|6e-18PREDICTED: transcription factor MYB82 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF037I18+                        TTAGTCAAAGTCTTAATTATNATAGTCTTAGGTAAAAATAGACTTGA
                      ____________________________________________________________
consensus                          TTAGTCAAAGTCTTAATTATNATAGTCTTAGGTAAAAATAGACTTGA
 
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JMFF037I18+           CTTGACAATTAAGCTCACTGACCGGTTGCCAAGAAGTTTATGCATTCTGATGATGAGGTC
                      ____________________________________________________________
consensus             CTTGACAATTAAGCTCACTGACCGGTTGCCAAGAAGTTTATGCATTCTGATGATGAGGTC
 
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JMFF013D23+                                                            TTTTTCCACCT
JMFF037I18+           TTTTTCGTCTTCTGACATCATACCACGTTTGATGTTTGGTCTAAGGTAATTTTTCCACCT
                      ____________________________________________________________
consensus             TTTTTCGTCTTCTGACATCATACCACGTTTGATGTTTGGTCTAAGGTAATTTTTCCACCT
 
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JMFF013D23+           GAGCCTGCAGCTCTTTCCACTTCTCATCAAACCCGATTTCTTGGAGATGGTTGCCCAATT
JMFF037I18+           GAGCCTGCAGCTCTTTCCACTTCTCATCAAACCCGATTTCTTGGAGATGGTTGCCCAATT
                      ____________________________________________________________
consensus             GAGCCTGCAGCTCTTTCCACTTCTCATCAAACCCGATTTCTTGGAGATGGTTGCCCAATT
 
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JMFF013D23+           ACCCTCCCCATGTGTTTCAACACATTTCTTCAGTGTCAAATCCTCTTCTGGAGTCCAAAA
JMFF037I18+           ACCCTCCCCATGTGTTTCAACACATTTCTTCAGTGTCAAATCCTCTTCTGGAGTCCAAAA
                      ____________________________________________________________
consensus             ACCCTCCCCATGTGTTTCAACACATTTCTTCAGTGTCAAATCCTCTTCTGGAGTCCAAAA
 
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JMFF013D23+           ACCTCTCTTCAACCCTGCCTTCACTTCTTTAGCCTTCATTGGATTTGAGTCCTCTGAAAA
JMFF037I18+           ACCTCTCTTCAACCCTGCCTTCACTTCTTTAGCCTTCATTGGATTTGAGTCCTCTGAAAA
                      ____________________________________________________________
consensus             ACCTCTCTTCAACCCTGCCTTCACTTCTTTAGCCTTCATTGGATTTGAGTCCTCTGAAAA
 
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JMFF013D23+           CTCAACTTTTATGGTGAAATCTGACAGTGGATTCATGATGAGTTAAATATATAGATGAAA
JMFF037I18+           CTCAACTTTTATGGTGAAATCTGACAGTGGATTCATGATGAGTTAAATATATAGATGAAA
                      ____________________________________________________________
consensus             CTCAACTTTTATGGTGAAATCTGACAGTGGATTCATGATGAGTTAAATATATAGATGAAA
 
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JMFF013D23+           GTGCATGGGGGGGATGTTTTGAGTTTGAACGGTAGATGATTACACGTACTAGAGGCCGGG
JMFF037I18+           GTGCATGGGGGGGATGTTTTGAGTTTGAACGGTAGATGATTACACGTACTAGAGGCCGGG
                      ____________________________________________________________
consensus             GTGCATGGGGGGGATGTTTTGAGTTTGAACGGTAGATGATTACACGTACTAGAGGCCGGG
 
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JMFF013D23+           GCCCTATGTTGATTCACTTTTGTGCTTTCTTTGCTAGCTACTTTTTTGATCTTGAAGTAA
JMFF037I18+           GCCCTATGTTGATTCACTTTTGTGCTTTCTTTGCTAGCTACTTTTTTGATCTTGAAGTAA
                      ____________________________________________________________
consensus             GCCCTATGTTGATTCACTTTTGTGCTTTCTTTGCTAGCTACTTTTTTGATCTTGAAGTAA
 
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JMFF013D23+           AGCTCATTTCTGCTCCACTTGTTAACCCCACTGAATCTATCCACATCTGAGATAAATCTT
JMFF037I18+           AGCTCATTTCTGCTCCACTTGTTAACCCCACTGAATCTATCCACATCTGAGATAAATCTT
                      ____________________________________________________________
consensus             AGCTCATTTCTGCTCCACTTGTTAACCCCACTGAATCTATCCACATCTGAGATAAATCTT
 
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JMFF013D23+           GCTAATATACTACGTAGGACCGACACAACTGAACATGCAATGCTAGCAAGTTTTCACTAT
JMFF037I18+           GCTAATATACTACGTAGGACCGACACAACTGAACATGCAATGCTAGCAAGTTTTCACTAT
                      ____________________________________________________________
consensus             GCTAATATACTACGTAGGACCGACACAACTGAACATGCAATGCTAGCAAGTTTTCACTAT