| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010A14 | Sequence | 490 | 000207 (8) | ref|NP_001275473.1| | 3e-18 | Aux/IAA protein [Solanum tuberosum] gb|AAM29182.1| Aux/IAA protein [Solanum tube | 685 | 011018 (15) | gb|ABM53871.1| | 4e-50 | IAA3 [Cestrum elegans] |
| JMFF014O04 | Sequence | 547 | 000207 (8) | gb|ABB55368.1| | 6e-31 | Aux/IAA protein-like [Solanum tuberosum] | 771 | 011018 (15) | ref|XP_009789143.1| | 8e-71 | PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris] |
| JMFF025D16 | Sequence | 584 | 000207 (8) | gb|ABB55368.1| | 3e-50 | Aux/IAA protein-like [Solanum tuberosum] | 732 | 011018 (15) | ref|XP_009789143.1| | 2e-61 | PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris] |
| JMFF031O04 | Sequence | 580 | 000207 (8) | gb|ABB55368.1| | 2e-49 | Aux/IAA protein-like [Solanum tuberosum] | 747 | 011018 (15) | ref|XP_009608764.1| | 4e-69 | PREDICTED: auxin-responsive protein IAA8-like [Nicotiana tomentosiformis] |
| JMFF034K17 | Sequence | 505 | 000207 (8) | gb|ABB55368.1| | 3e-28 | Aux/IAA protein-like [Solanum tuberosum] | 452 | 011018 (15) | |||
| JMFF036L17 | Sequence | 551 | 000207 (8) | gb|ABB55368.1| | 1e-15 | Aux/IAA protein-like [Solanum tuberosum] | |||||
| JMFF037F14 | Sequence | 531 | 000207 (8) | gb|ABB55368.1| | 5e-31 | Aux/IAA protein-like [Solanum tuberosum] | 761 | 011018 (15) | ref|XP_009608764.1| | 5e-69 | PREDICTED: auxin-responsive protein IAA8-like [Nicotiana tomentosiformis] |
| JMFS014D12 | Sequence | 608 | 000207 (8) | gb|ABB55368.1| | 1e-50 | Aux/IAA protein-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF025D16+ TGGAGA
JMFF031O04+ TGGAGA
JMFS014D12+ TGAATTGGAGA
____________________________________________________________
consensus TGAATTGGAGA
. : . : . : . : . : . :
JMFF025D16+ GAAACTTTCCCTCTGAGAATTCATCCATAGCATCAGAAAACCCTCTTTTATTCCCAGTAA
JMFF031O04+ GAAACTTTCCCTCTGAGAATTCATCCATAGCATCAGAAAACCCTCTTTTATTCCCAGTAA
JMFS014D12+ GAAACTTTCCCTCTGAGAATTCATCCATAGCATCAGAAAACCCTCTTTTATTCCCAGTAA
____________________________________________________________
consensus GAAACTTTCCCTCTGAGAATTCATCCATAGCATCAGAAAACCCTCTTTTATTCCCAGTAA
. : . : . : . : . : . :
JMFF025D16+ CCACGGTCTTCTGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
JMFF031O04+ CCACGGTCTTCTGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
JMFF014O04+ TGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
JMFS014D12+ CCACGGTCTTCTGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
JMFF034K17+ TGGCAGGGTGCAGTGGAAACAGTA
JMFF037F14+ TGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
____________________________________________________________
consensus CCACGGTCTTCTGTGATAGAGTAAAGTTACTCTCTTTGGCAGGGTGCAGTGGAAACAGTA
. : . : . : . : . : . :
JMFF025D16+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF031O04+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF014O04+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF010A14+ TGGAGATTGTGATCCAGGAA
JMFS014D12+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF034K17+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF037F14+ GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
JMFF036L17+ TGATCCAGGAA
____________________________________________________________
consensus GCTTCTCATCAAGCTTAGTGCTAGGCTCGGAATCCCTCTGTGGAGATTGTGATCCAGGAA
. : . : . : . : . : . :
JMFF025D16+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF031O04+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF014O04+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF010A14+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFS014D12+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF034K17+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF037F14+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
JMFF036L17+ GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
____________________________________________________________
consensus GTCCAAGTCTCAGCTCAGTTGCCCTCAAGTTCAGTCCACGGCCACTATTGTTTTCTGATG
. : . : . : . : . : . :
JMFF025D16+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF031O04+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF014O04+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF010A14+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFS014D12+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF034K17+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF037F14+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
JMFF036L17+ TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
____________________________________________________________
consensus TGGAAGAAATAGTGGAGCTATCCACTGATGAACAGTCAGACAATCCCATATAGTTCCACT
. : . : . : . : . : . :
JMFF025D16+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF031O04+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF014O04+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF010A14+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFS014D12+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF034K17+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF037F14+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
JMFF036L17+ CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
____________________________________________________________
consensus CTTTGAGCTCTGGTCCATTCTGGCATACACTATCTAAGGAGATTGGAGAAGCCATGTGTG
. : . : . : . : . : . :
JMFF025D16+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF031O04+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF014O04+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF010A14+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFS014D12+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF034K17+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF037F14+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
JMFF036L17+ TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
____________________________________________________________
consensus TAACATTGCTTTGGCCATCCTCCCCAACACCAAGCAGTGGTGGAGACATCAGCCTCTTAA
. : . : . : . : . : . :
JMFF025D16+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF031O04+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF014O04+ ATTATCCTTCAATTCCTTTCAGTAAAA
JMFF010A14+ ATTATCCTTCAATTCCTTTCAGTAAAA
JMFS014D12+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF034K17+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF037F14+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
JMFF036L17+ ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
____________________________________________________________
consensus ATTATCCTTCAATTCCTTTCAGTAAAACTGCAAAAGAAGCTTCTGGATCGATTTCCGGTG
. : . : . : . : . : . :
JMFF025D16+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFF031O04+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFS014D12+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFF034K17+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFF037F14+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
JMFF036L17+ GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
____________________________________________________________
consensus GTAGAAGAAGAAGATGATGACGATGATGAGAGTACAGTAGTGAGAATTTCGCTATGCAGA
. : . : . : . : . : . :
JMFF025D16+ AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACT
JMFF031O04+ AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACT
JMFS014D12+ AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACTAGGGACCCTCCATT
JMFF034K17+ AAGAGGGAGAGAGCAGAGAAAAGAGAGAGAAACTAGGGACCCTCCATTTGGCAGAAA
JMFF037F14+ AAGAGGGAGAGAGCAGAGAAAAGAGAGAGAAACTAGGGACCCTCCATTTGGCAGAAA
JMFF036L17+ AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACTAGGGACCCTCCATTTGGCAGAAAGTT
____________________________________________________________
consensus AAGAGGGAGAGAGCAGAGAAAGGAGAGAGAAACTAGGGACCCTCCATTTGGCAGAAAGTT
. : . : . : . : . : . :
JMFF036L17+ ACAAAAAGCTTTTTTGCTGTCCCGATGTGAAACTCAATGCTTATTAAAAAAAACCTCCCT
____________________________________________________________
consensus ACAAAAAGCTTTTTTGCTGTCCCGATGTGAAACTCAATGCTTATTAAAAAAAACCTCCCT
. : . : . : . : . : . :
JMFF036L17+ CGGCTACCCGCCCTCTCAAGTCTCAACCTTCAAGAACGTATGGAATTACAATTACTCCTT
____________________________________________________________
consensus CGGCTACCCGCCCTCTCAAGTCTCAACCTTCAAGAACGTATGGAATTACAATTACTCCTT