Contig 000197:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035C07Sequence530000197 (2)ref|XP_009598927.1|2e-92PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon746001149 (7)emb|CDP08405.1|4e-92unnamed protein product [Coffea canephora]
JMFF045A13Sequence613000197 (2)ref|XP_009800601.1|3e-115PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon571001149 (7)emb|CDP08405.1|5e-61unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF045A13+ AGGCGCAGAGAATGCACTCGTACATCCCA
                      ____________________________________________________________
consensus AGGCGCAGAGAATGCACTCGTACATCCCA
 
. : . : . : . : . : . :
JMFF045A13+ TCCAGCTTAGCTCTATCGGCCTTGCTCTGAGGAATCTCTTTGCCGGGCGTCTGGGGAGGA
                      ____________________________________________________________
consensus TCCAGCTTAGCTCTATCGGCCTTGCTCTGAGGAATCTCTTTGCCGGGCGTCTGGGGAGGA
 
. : . : . : . : . : . :
JMFF045A13+ GTCTTCCTCTTGAGCCAGGGTTCAATTGACTTATACTGGTTGTAGAAGTTGGTCATATCA
JMFF035C07+ TGAGCCAGGGTTCAATTGACTTATACTGGTTGTAGAAGTTGGTCATATCA
                      ____________________________________________________________
consensus GTCTTCCTCTTGAGCCAGGGTTCAATTGACTTATACTGGTTGTAGAAGTTGGTCATATCA
 
. : . : . : . : . : . :
JMFF045A13+ ACCACCAGATCCTTTATCACGAACATGTGGGGGAGCGGAGTGATCATGGAGTCAGAGCCG
JMFF035C07+ ACCACCAGATCCTTTATCACGAACATGTGGGGGAGCGGAGTGATCATGGAGTCAGAGCCG
                      ____________________________________________________________
consensus ACCACCAGATCCTTTATCACGAACATGTGGGGGAGCGGAGTGATCATGGAGTCAGAGCCG
 
. : . : . : . : . : . :
JMFF045A13+ GAAGAAATCTTGGTGAGGCAAGCTAGTCCGTTCTTGCCGTCGATATTCATGGCGCAAGAG
JMFF035C07+ GAAGAAATCTTGGTGAGGCAAGCTAGTCCGTTCTTGCCGTCGATATTCATGGCGCAAGAG
                      ____________________________________________________________
consensus GAAGAAATCTTGGTGAGGCAAGCTAGTCCGTTCTTGCCGTCGATATTCATGGCGCAAGAG
 
. : . : . : . : . : . :
JMFF045A13+ CCGCAGATGCCCTCCCGGCACGACCGCCGGAAGGTGAGTGAGGAGTCGATCTCGTTCTTA
JMFF035C07+ CCGCAGATGCCCTCCCGGCACGACCGCCGGAAGGTGAGTGAGGAGTCGATCTCGTTCTTA
                      ____________________________________________________________
consensus CCGCAGATGCCCTCCCGGCACGACCGCCGGAAGGTGAGTGAGGAGTCGATCTCGTTCTTA
 
. : . : . : . : . : . :
JMFF045A13+ ATCTTGATCAGAGCGTCTAGAACCATGGGCCCGCACTCCTTCAGATCGACTTGGTACTCC
JMFF035C07+ ATCTTGATCAGAGCGTCTAGAACCATGGGCCCGCACTCCTTCAGATCGACTTGGTACTCC
                      ____________________________________________________________
consensus ATCTTGATCAGAGCGTCTAGAACCATGGGCCCGCACTCCTTCAGATCGACTTGGTACTCC
 
. : . : . : . : . : . :
JMFF045A13+ TGAAGCTCCGGTTTTTGCGGGTTCTCCGGACTCCACCGGTAGATTTGGAACTTTTTTATG
JMFF035C07+ TGAAGCTCCGGTTTTTGCGGGTTCTCCGGACTCCACCGGTAGATTTGGAACTTTTTTATG
                      ____________________________________________________________
consensus TGAAGCTCCGGTTTTTGCGGGTTCTCCGGACTCCACCGGTAGATTTGGAACTTTTTTATG
 
. : . : . : . : . : . :
JMFF045A13+ TTGGCGGCGGCGGCCTTGGACTCCACCTGCTGCGCTTGAGCTTCGGACGCATGGGCACGA
JMFF035C07+ TTGGCGGCGGCGGCCTTGGACTCCACCTGCTGCGCTTGAGCTTCGGACGCATGGGCACGA
                      ____________________________________________________________
consensus TTGGCGGCGGCGGCCTTGGACTCCACCTGCTGCGCTTGAGCTTCGGACGCATGGGCACGA
 
. : . : . : . : . : . :
JMFF045A13+ CCAAATATCTGCTTCGCCGCAGGAGAAGACTCAAACCTCGATATCGCTCGTCGGACCAAA
JMFF035C07+ CCAAATATCTGCTTCGCCGCAGGAGAAGACTCAAACCTCGATATCGCTCGTCGGACCAAA
                      ____________________________________________________________
consensus CCAAATATCTGCTTCGCCGCAGGAGAAGACTCAAACCTCGATATCGCTCGTCGGACCAAA
 
. : . : . : . : . : . :
JMFF045A13+ CCAGTCGCCATTACCTCACCTCGTAAAAGCAAAAAGGAAAACGA
JMFF035C07+ CCAGTCGCCATTACCTCACCTCGTAAAAGCAAAAAGGAAAACGATTTAGTATTCGAGAAT
                      ____________________________________________________________
consensus CCAGTCGCCATTACCTCACCTCGTAAAAGCAAAAAGGAAAACGATTTAGTATTCGAGAAT