Contig 000197:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035C07Sequence530000197 (2)ref|XP_009598927.1|2e-92PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon746001149 (7)emb|CDP08405.1|4e-92unnamed protein product [Coffea canephora]
JMFF045A13Sequence613000197 (2)ref|XP_009800601.1|3e-115PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon571001149 (7)emb|CDP08405.1|5e-61unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF045A13+                                          AGGCGCAGAGAATGCACTCGTACATCCCA
                      ____________________________________________________________
consensus                                            AGGCGCAGAGAATGCACTCGTACATCCCA
 
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JMFF045A13+           TCCAGCTTAGCTCTATCGGCCTTGCTCTGAGGAATCTCTTTGCCGGGCGTCTGGGGAGGA
                      ____________________________________________________________
consensus             TCCAGCTTAGCTCTATCGGCCTTGCTCTGAGGAATCTCTTTGCCGGGCGTCTGGGGAGGA
 
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JMFF045A13+           GTCTTCCTCTTGAGCCAGGGTTCAATTGACTTATACTGGTTGTAGAAGTTGGTCATATCA
JMFF035C07+                     TGAGCCAGGGTTCAATTGACTTATACTGGTTGTAGAAGTTGGTCATATCA
                      ____________________________________________________________
consensus             GTCTTCCTCTTGAGCCAGGGTTCAATTGACTTATACTGGTTGTAGAAGTTGGTCATATCA
 
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JMFF045A13+           ACCACCAGATCCTTTATCACGAACATGTGGGGGAGCGGAGTGATCATGGAGTCAGAGCCG
JMFF035C07+           ACCACCAGATCCTTTATCACGAACATGTGGGGGAGCGGAGTGATCATGGAGTCAGAGCCG
                      ____________________________________________________________
consensus             ACCACCAGATCCTTTATCACGAACATGTGGGGGAGCGGAGTGATCATGGAGTCAGAGCCG
 
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JMFF045A13+           GAAGAAATCTTGGTGAGGCAAGCTAGTCCGTTCTTGCCGTCGATATTCATGGCGCAAGAG
JMFF035C07+           GAAGAAATCTTGGTGAGGCAAGCTAGTCCGTTCTTGCCGTCGATATTCATGGCGCAAGAG
                      ____________________________________________________________
consensus             GAAGAAATCTTGGTGAGGCAAGCTAGTCCGTTCTTGCCGTCGATATTCATGGCGCAAGAG
 
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JMFF045A13+           CCGCAGATGCCCTCCCGGCACGACCGCCGGAAGGTGAGTGAGGAGTCGATCTCGTTCTTA
JMFF035C07+           CCGCAGATGCCCTCCCGGCACGACCGCCGGAAGGTGAGTGAGGAGTCGATCTCGTTCTTA
                      ____________________________________________________________
consensus             CCGCAGATGCCCTCCCGGCACGACCGCCGGAAGGTGAGTGAGGAGTCGATCTCGTTCTTA
 
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JMFF045A13+           ATCTTGATCAGAGCGTCTAGAACCATGGGCCCGCACTCCTTCAGATCGACTTGGTACTCC
JMFF035C07+           ATCTTGATCAGAGCGTCTAGAACCATGGGCCCGCACTCCTTCAGATCGACTTGGTACTCC
                      ____________________________________________________________
consensus             ATCTTGATCAGAGCGTCTAGAACCATGGGCCCGCACTCCTTCAGATCGACTTGGTACTCC
 
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JMFF045A13+           TGAAGCTCCGGTTTTTGCGGGTTCTCCGGACTCCACCGGTAGATTTGGAACTTTTTTATG
JMFF035C07+           TGAAGCTCCGGTTTTTGCGGGTTCTCCGGACTCCACCGGTAGATTTGGAACTTTTTTATG
                      ____________________________________________________________
consensus             TGAAGCTCCGGTTTTTGCGGGTTCTCCGGACTCCACCGGTAGATTTGGAACTTTTTTATG
 
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JMFF045A13+           TTGGCGGCGGCGGCCTTGGACTCCACCTGCTGCGCTTGAGCTTCGGACGCATGGGCACGA
JMFF035C07+           TTGGCGGCGGCGGCCTTGGACTCCACCTGCTGCGCTTGAGCTTCGGACGCATGGGCACGA
                      ____________________________________________________________
consensus             TTGGCGGCGGCGGCCTTGGACTCCACCTGCTGCGCTTGAGCTTCGGACGCATGGGCACGA
 
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JMFF045A13+           CCAAATATCTGCTTCGCCGCAGGAGAAGACTCAAACCTCGATATCGCTCGTCGGACCAAA
JMFF035C07+           CCAAATATCTGCTTCGCCGCAGGAGAAGACTCAAACCTCGATATCGCTCGTCGGACCAAA
                      ____________________________________________________________
consensus             CCAAATATCTGCTTCGCCGCAGGAGAAGACTCAAACCTCGATATCGCTCGTCGGACCAAA
 
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JMFF045A13+           CCAGTCGCCATTACCTCACCTCGTAAAAGCAAAAAGGAAAACGA                
JMFF035C07+           CCAGTCGCCATTACCTCACCTCGTAAAAGCAAAAAGGAAAACGATTTAGTATTCGAGAAT
                      ____________________________________________________________
consensus             CCAGTCGCCATTACCTCACCTCGTAAAAGCAAAAAGGAAAACGATTTAGTATTCGAGAAT