| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003B13 | Sequence | 580 | 000193 (9) | ref|XP_009385541.1| | 6e-110 | PREDICTED: glutamine synthetase nodule isozyme-like [Musa acuminata subsp. mala | 732 | 000193 (9) | gb|ABK94916.1| | 5e-142 | unknown [Populus trichocarpa] |
| JMFF006I04 | Sequence | 576 | 000193 (9) | ref|XP_009385541.1| | 9e-107 | PREDICTED: glutamine synthetase nodule isozyme-like [Musa acuminata subsp. mala | 788 | 000193 (9) | gb|ABK94916.1| | 4e-141 | unknown [Populus trichocarpa] |
| JMFF011L14 | Sequence | 411 | 000193 (9) | ref|XP_009385541.1| | 3e-67 | PREDICTED: glutamine synthetase nodule isozyme-like [Musa acuminata subsp. mala | 761 | 000193 (9) | ref|XP_006374208.1| | 4e-135 | glutamine synthetase family protein [Populus trichocarpa] gb|ERP52005.1| glutami |
| JMFF034B04 | Sequence | 532 | 000193 (9) | ref|XP_006391363.1| | 2e-11 | hypothetical protein EUTSA_v10018774mg [Eutrema salsugineum] gb|ESQ28649.1| hypo | 678 | 000193 (9) | ref|XP_006374208.1| | 9e-120 | glutamine synthetase family protein [Populus trichocarpa] gb|ERP52005.1| glutami |
| JMSF010O22 | Sequence | 252 | 000193 (9) | gb|AAA33762.1| | 8e-38 | glutamine synthetase, partial [Phaseolus vulgaris] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF034B04- CAATTCTTGAACCCTTACAACCATAATTCCATTTAA
rJMFF011L14- TTAA
____________________________________________________________
consensus CAATTCTTGAACCCTTACAACCATAATTCCATTTAA
. : . : . : . : . : . :
rJMFF034B04- GAAAAATAACATGCCAAATCAATGTGAAACAATAGCATTTTAGAATAGAAATGCAAGGTA
rJMFF003B13- AACATGCCAAATCAATGTGAAACAATAGCATTTTAGAATAGAAATGCAAGGTA
rJMFF011L14- GAAAAATAACATGCCAAATCAATGTGAAACAATAGCATTTTAGAATAGAAATGCAAGGTA
rJMFF006I04- AACATGCCAAATCAATGTGAAACAATAGCATTTTAGAATAGAAATGCAAGGTA
____________________________________________________________
consensus GAAAAATAACATGCCAAATCAATGTGAAACAATAGCATTTTAGAATAGAAATGCAAGGTA
. : . : . : . : . : . :
rJMFF034B04- GGGTATGTAGTAGTAAAATACAACTTCAAGTTCAATCCTTTCATGGCTTCCAGATAATAG
rJMFF003B13- GGGTATGTAGTAGTAAAATACAACTTCAAGTTCAATCCTTTCATGGCTTCCAGATAATAG
rJMFF011L14- GGGTATGTAGTAGTAAAATACAACTTCAAGTTCAATCCTTTCATGGCTTCCAGATAATAG
rJMFF006I04- GGGTATGTAGTAGTAAAATACAACTTCAAGTTCAATCCTTTCATGGCTTCCAGATAATAG
____________________________________________________________
consensus GGGTATGTAGTAGTAAAATACAACTTCAAGTTCAATCCTTTCATGGCTTCCAGATAATAG
. : . : . : . : . : . :
rJMFF034B04- TTGTTTCTGCGACCATAGAAGTAACCACGTAAGGATCCATATTCGACGCAGGTCTCCTAT
rJMFF003B13- TTGTTTCTGCGACCATAGAAGTAACCACGTAAGGATCCATATTCGACGCAGGTCTCCTAT
rJMFF011L14- TTGTTTCTGCGACCATAGAAGTAACCACGTAAGGATCCATATTCGACGCAGGTCTCCTAT
rJMFF006I04- TTGTTTCTGCGACCATAGAAGTAACCACGTAAGGATCCATATTCGACGCAGGTCTCCTAT
____________________________________________________________
consensus TTGTTTCTGCGACCATAGAAGTAACCACGTAAGGATCCATATTCGACGCAGGTCTCCTAT
. : . : . : . : . : . :
rJMFF034B04- CCTCAAAATAGCCCTTGCCCTCTTTCTCCGTGTCTCTGCCAACCCTAACCGAGGCTCCAC
rJMFF003B13- CCTCAAAATAGCCCTTGCCCTCTTTCTCCGTGTCTCTGCCAACCCTAACCGAGGCTCCAC
rJMFF011L14- CCTCAAAATAGCCCTTGCCCTCTTTCTCCGTGTCTCTGCCAACCCTAACCGAGGCTCCAC
rJMFF006I04- CCTCAAAATAGCCCTTGCCCTCTTTCTCCGTGTCTCTGCCAACCCTAACCGAGGCTCCAC
____________________________________________________________
consensus CCTCAAAATAGCCCTTGCCCTCTTTCTCCGTGTCTCTGCCAACCCTAACCGAGGCTCCAC
. : . : . : . : . : . :
rJMFF034B04- GATTTGCCACACCCCATGAGAATTTATGGATATTAGCAGTTTCATGCCTTCCGGTGAGGC
rJMFF003B13- GATTTGCCACACCCCATGAGAATTTATGGATATTAGCAGTTTCATGCCTTCCGGTGAGGC
rJMFF011L14- GATTTGCCACACCCCATGAGAATTTATGGATATTAGCAGTTTCATGCCTTCCGGTGAGGC
JMSF010O22+ C
rJMFF006I04- GATTTGCCACACCCCATGAGAATTTATGGATATTAGCAGTTTCATGCCTTCCGGTGAGGC
____________________________________________________________
consensus GATTTGCCACACCCCATGAGAATTTATGGATATTAGCAGTTTCATGCCTTCCGGTGAGGC
. : . : . : . : . : . :
rJMFF034B04- GACGTTCATTGCCTTCGCCATAAGCAGCAATGTGTTCCTTGTGCTTCAGCTCCAGTTTTG
rJMFF003B13- GACGTTCATTGCCTTCGCCATAAGCAGCAATGTGTTCCTTGTGCTTCAGCTCCAGTTTTG
rJMFF011L14- GACGTTCATTGCCTTCGCCATAAGCAGCAATGTGTTCCTTGTGCTTCAGCTCCAGTTTTG
JMSF010O22+ GACGTTCATTGCCTTCGCCATAAGCAGCAATGTGTTCCTTGTGCTTCAGCTCCAGTTTTG
rJMFF006I04- GACGTTCATTGCCTTCGCCATAAGCAGCAATGTGTTCCTTGTGCTTCAGCTCCAGTTTTG
____________________________________________________________
consensus GACGTTCATTGCCTTCGCCATAAGCAGCAATGTGTTCCTTGTGCTTCAGCTCCAGTTTTG
. : . : . : . : . : . :
rJMFF034B04- AGATTGCCTTCTTTATCACTTCAAAACCTCCATCATTCCTCATCGACTTTGTGCTGTAAT
rJMFF003B13- AGATTGCCTTCTTTATCACTTCAAAACCTCCATCATTCCTCATCGACTTTGTGCTGTAAT
rJMFF011L14- AGATTGCCTTCTTTATCACTTCAAAACCTCCATCATTCCTCATCGACTTTGTGCTGTAAT
JMSF010O22+ AGATTGCCTTCTTTATCACTTCAAAACCTCCATCATTCCTCATCGACTTTGTGCTGTAAT
rJMFF006I04- AGATTGCCTTCTTTATCACTTCAAAACCTCCATCATTCCTCATCGACTTTGTGCTGTAAT
____________________________________________________________
consensus AGATTGCCTTCTTTATCACTTCAAAACCTCCATCATTCCTCATCGACTTTGTGCTGTAAT
. : . : . : . : . : . :
rJMFF034B04- TTGTATGTGCACCAGCTCCATTCCAATCGCCTGGAATGGGTTTGGGATCAAAGGAGAGAA
rJMFF003B13- TTGTATGTGCACCAGCTCCATTCCAATCGCCCGGAATGGGTTTGGGATCAAAGGAGAGAA
rJMFF011L14- TTGTATGTGCACCAGCTCCATTCCAATCGCCCGGAATGGGTTTGGGATCAAAGGAGAGAA
JMSF010O22+ TTGTATGTGCACCAGCTCCATTCCAATCGCCCGGAATGGGTTTGGGATCAAAGGAGAGAA
rJMFF006I04- TTGTATGTGCACCAGCTCCATTCCAATCGCCCGGAATGGGTTTGGGATCAAAGGAGAGAA
____________________________________________________________
consensus TTGTATGTGCACCAGCTCCATTCCAATCGCCCGGAATGGGTTTGGGATCAAAGGAGAGAA
. : . : . : . : . : . :
rJMFF034B04- CCACTCCAGCTATCTCAGTAATCCTCTCTAGAATGTAACGTGCCACCCAGACTTCATCAC
rJMFF003B13- CCACTCCAGCTATCTCAGTAATCCTCTCTAGAATGTAACGTGCCACCCAGACTTCATCAT
rJMFF011L14- CCACTCCAGCTATCTCAGTAATCCTCTCTAGAATGTAACGTGCCACCCAGACTTCATCAT
JMSF010O22+ CCACTCCAGCTATCTCAGTAATCCTCT
rJMFF006I04- CCACTCCAGCTATCTCAGTAATCCTCTCTAGAATGTAACGTGCCACCCAGACTTCATCAC
____________________________________________________________
consensus CCACTCCAGCTATCTCAGTAATCCTCTCTAGAATGTAACGTGCCACCCAGACTTCATCAT
. : . : . : . : . : . :
rJMFF034B04- CAGCACTGATTCCGACAGATGGACCGACTTGAAACTCCCACTGTCCGGGCATAACTTCAC
rJMFF003B13- CAGCACTGATTCCGACAGATGGACCGACTTGAAACTCCCACTGTCCGGGCATAACTTCAC
rJMFF011L14- CAGCACTGATTCCGACAGATGGACCGACTTGAAACTCCCACTGTCCGGGCATAACTTCAC
rJMFF006I04- CAGCACTGATTCCGACAGATGGACCGACTTGAAACTCCCACTGTCCGGGCATAACTTCAC
____________________________________________________________
consensus CAGCACTGATTCCGACAGATGGACCGACTTGAAACTCCCACTGTCCGGGCATAACTTCAC
. : . : . : . : . : . :
rJMFF034B04- CATTGATGCCACTGATGTTAATACCAGCATACAAACAGGCCT
rJMFF003B13- CATTGATGCCACTGATGTTAATACCAGCATACAAACAGGCCTTATAGTGAGAGTCCACAA
rJMFF011L14- CATTGATGCCACTGATGTTAATACCAGCATACAAACAGGCCTTATAGTGAGAGTCCACAA
rJMFF006I04- CATTGATGCCACTGATGTTAATACCAGCATACAAACAGGCCTTATAGTGAGAGTCCACAA
JMFF003B13+ AGAGTCCACAA
____________________________________________________________
consensus CATTGATGCCACTGATGTTAATACCAGCATACAAACAGGCCTTATAGTGAGAGTCCACAA
. : . : . : . : . : . :
rJMFF003B13- TGTCCCTCCCAAAAGCCTTGTCTGCACCAATTCCACAATAGTACGGTCCCTGANGCCCT-
rJMFF011L14- TGTCCCTCCCAAAAGCCTTGTCTGCACCAATTCCACAATAGTACGGTCCCTGAGGCCCT-
rJMFF006I04- TGTCCCTCCCAAAAGCCTTGTCTGCACCAATTCCACAATAGTACGGTCCCTGAGGCCCTG
JMFF006I04+ TCCCTCCCAAAAGCCTTGTCTGCACCAATTCCACAATAGTACGGTCCCTGAGGCCCT-
JMFF003B13+ TGTCCCTCCCAAAAGCCTTGTCTGCACCAATTCCACAATAGTACGGTCCCTGAGGCCCT-
____________________________________________________________
consensus TGTCCCTCCCAAAAGCCTTGTCTGCACCAATTCCACAATAGTACGGTCCCTGAGGCCCT-
. : . : . : . : . : . :
rJMFF003B13- GGAAATCCTCCCACAGG
rJMFF011L14- GGAAATCCTCCCACAGGNCAACCAAGTGGNCATTTCAC
rJMFF006I04- GGAAATCCTCCCACAGGCCAACCAAGTGGNCATTTCACATCTTTCTGCAACAGAGTATAC
JMFF006I04+ GGAAATCCTCCCACAGGCCAACCAAGTGGCCATTTCACATCTTTCTGCAACAGAGTATAC
JMFF003B13+ GGAAATCCTCCCACAGGCCAACCAAGTGGCCATTTCACATCTTTCTGCAACAGAGTATAC
____________________________________________________________
consensus GGAAATCCTCCCACAGGCCAACCAAGTGGCCATTTCACATCTTTCTGCAACAGAGTATAC
. : . : . : . : . : . :
rJMFF006I04- TCTTGCTCTATTCCA
JMFF006I04+ TCTTGCTCTATTCCATACCATGGCTCTTCAGCAACAACATCTGGATGGTTAAATATTTTT
JMFF003B13+ TCTTGCTCTATTCCATACCATGGCTCTTCAGCAACAACATCTGGATGGTTAAATATTTTT
____________________________________________________________
consensus TCTTGCTCTATTCCATACCATGGCTCTTCAGCAACAACATCTGGATGGTTAAATATTTTT
. : . : . : . : . : . :
JMFF006I04+ GCTGCATTATATCTCTTGTTTGTTGGGAGAGGCTCACCTGCTGGAGTATAAGCATCACAC
JMFF003B13+ GCTGCATTATATCTCTTGTTTGTTGGGAGAGGCTCACCTGCTGGAGTATAAGCATCACAC
____________________________________________________________
consensus GCTGCATTATATCTCTTGTTTGTTGGGAGAGGCTCACCTGCTGGAGTATAAGCATCACAC
. : . : . : . : . : . :
JMFF011L14+ TATAGG
JMFF006I04+ ATCACAAGAATATTGTTGCCTCTTCTAAAAGGGTCCCTGAATATTGCCTGAGGATATAGG
JMFF003B13+ ATCACAAGAATATTGTTGCCTCTTCTAAAAGGGTCCCTGAATATTGCCTGAGGATATAGG
JMFF034B04+ TATAGG
____________________________________________________________
consensus ATCACAAGAATATTGTTGCCTCTTCTAAAAGGGTCCCTGAATATTGCCTGAGGATATAGG
. : . : . : . : . : . :
JMFF011L14+ ATGACTTCACTGTCCTCTCCCGGAGCTTGGCCAGTGCTAGAACCATCATAGTTCCACTTT
JMFF006I04+ ATGACTTCACTGTCCTCTCCCGGAGCTTGGCCAGTGCTAGAACCATCATAGTTCCACTTT
JMFF003B13+ ATGACTTCACTGTCCTCTCCCGGAGCTTGGCCAGTGCTAGAACCATCATAGTTCCACTTT
JMFF034B04+ ATGACTTCACTGTCCTCTCCCGGAGCTTGGCCAGTGCTAGAACCATCATAGTTCCACTTT
____________________________________________________________
consensus ATGACTTCACTGTCCTCTCCCGGAGCTTGGCCAGTGCTAGAACCATCATAGTTCCACTTT
. : . : . : . : . : . :
JMFF011L14+ GGAAGCT
JMFF006I04+ GGAAGCT
JMFF003B13+ GGAAGCTCAGAAGGGTCTTTTACAGCCTTAGGAATGGTC
JMFF034B04+ GGAAGCTCAGAAGGGTCTTTTACAGCCTTAGGAATGGTCTATAATTCAATAAACAAACAA
____________________________________________________________
consensus GGAAGCTCAGAAGGGTCTTTTACAGCCTTAGGAATGGTCTATAATTCAATAAACAAACAA
. : . : . : . : . : . :
JMFF034B04+ ATCATTAATTCCCAAAATTCCTTTAAAAATACCAAAAAATTCCTTTTTTTTATGATATAA
____________________________________________________________
consensus ATCATTAATTCCCAAAATTCCTTTAAAAATACCAAAAAATTCCTTTTTTTTATGATATAA
. : . : . : . : . : . :
JMFF034B04+ AAGAAACCCGCAACCAGAGTTCGTTCATGTGATCAATCAGCCTAAATTGGTCATAGCTGA
____________________________________________________________
consensus AAGAAACCCGCAACCAGAGTTCGTTCATGTGATCAATCAGCCTAAATTGGTCATAGCTGA
. : . : . : . : . : . :
JMFF034B04+ TCCGCTCAAATTAAAAATATCAATAGAACATTGAGAATCGAACCAGTAACCTTGTGGATA
____________________________________________________________
consensus TCCGCTCAAATTAAAAATATCAATAGAACATTGAGAATCGAACCAGTAACCTTGTGGATA
. : . : . : . : . : . :
JMFF034B04+ CTAAGTTAACAGTCAGATCTAAATCTCTCTCACACACAGAGAATTATGTGTATAGCAAAT
____________________________________________________________
consensus CTAAGTTAACAGTCAGATCTAAATCTCTCTCACACACAGAGAATTATGTGTATAGCAAAT
. : . : . : . : . : . :
JMFF034B04+ TACCCTGGCTTTGCTCCTCAGGCCCAAACCAGTTCCATCAATCCATATGTATTCAACAAT
____________________________________________________________
consensus TACCCTGGCTTTGCTCCTCAGGCCCAAACCAGTTCCATCAATCCATATGTATTCAACAAT
. : . : . : . : . : . :
JMFF034B04+ GATTTTGTCGGTGGTTTCGGAGAGATCAAGGTTGATCAAATCAGAAAGCAAAGCCACGAT
____________________________________________________________
consensus GATTTTGTCGGTGGTTTCGGAGAGATCAAGGTTGATCAAATCAGAAAGCAAAGCCACGAT