Contig 000192:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034A18Sequence483000192 (6)gb|KDO47061.1|1e-59hypothetical protein CISIN_1g014714mg [Citrus sinensis]758001162 (6)ref|XP_009630346.1|2e-81PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis]
JMFF037M24Sequence585000192 (6)ref|XP_002521172.1|5e-80diphosphomevalonate decarboxylase, putative [Ricinus communis] gb|EEF41203.1| di722001162 (6)ref|XP_009630346.1|1e-81PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis]
JMSF013F18Sequence504000192 (6)ref|XP_002521172.1|3e-77diphosphomevalonate decarboxylase, putative [Ricinus communis] gb|EEF41203.1| di777001162 (6)emb|CDO99902.1|9e-60unnamed protein product [Coffea canephora]
JMSF014D03Sequence316000192 (6)gb|KJB78631.1|3e-42hypothetical protein B456_013G012400 [Gossypium raimondii]787001162 (6)ref|XP_006361468.1|2e-115PREDICTED: diphosphomevalonate decarboxylase-like [Solanum tuberosum]
JMSF026F24Sequence636000192 (6)ref|XP_006367129.1|6e-74PREDICTED: diphosphomevalonate decarboxylase-like [Solanum tuberosum]749001162 (6)ref|XP_009630346.1|2e-67PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis]
JMSF048J08Sequence378000192 (6)ref|XP_002315441.1|3e-64mevalonate disphosphate decarboxylase family protein [Populus trichocarpa] gb|E787001162 (6)emb|CDO99902.1|4e-58unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048J08+                                     CGTCCACTAGTTGAACAGCAAGACTATCACTTCC
                      ____________________________________________________________
consensus                                       CGTCCACTAGTTGAACAGCAAGACTATCACTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048J08+           ATCCTCTTCTTTTCCCATGATCCACTTAACAAATCCTCCAAATAGACTTCGGCAAGCACT
                      ____________________________________________________________
consensus             ATCCTCTTCTTTTCCCATGATCCACTTAACAAATCCTCCAAATAGACTTCGGCAAGCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048J08+           GCCTGAACCTTGCCTTGCTATAGCAGAGAGTTGGCTATTATCTTCTTTCACATTCATTAG
                      ____________________________________________________________
consensus             GCCTGAACCTTGCCTTGCTATAGCAGAGAGTTGGCTATTATCTTCTTTCACATTCATTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048J08+           CTTTCCAAGGGCAAATACAAGGCAGGCAAAACCAGCAGCTGAAGAAGCCAAGCCTGCAGC
JMSF026F24+                            CAAGGCAGGCAAAACCAGCAGCTGAAGAAGCCAAGCCTGCAGC
JMSF013F18+                            CAAGGCAGGCAAAACCAGCAGCTGAAGAAGCCAAGCCTGCAGC
JMFF037M24+                            CAAGGCAGGCAAAACCAGCAGCTGAAGAAGCCAAGCCTGCAGC
                      ____________________________________________________________
consensus             CTTTCCAAGGGCAAATACAAGGCAGGCAAAACCAGCAGCTGAAGAAGCCAAGCCTGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048J08+           AGTAGGGAAATTATTGTAAGAAGCGATATGCACATGCAGGTTCTCCCAATCCTTCTTTGT
JMSF026F24+           AGTAGGGAAATTATTGTAAGAAGCGATATGCACATGCAGGTTCTCCCAATCCTTCTTTGT
JMSF013F18+           AGTAGGGAAATTATTGTAAGAAGCGATATGCACATGCAGGTTCTCCCAATCCTTCTTTGT
JMFF037M24+           AGTAGGGAAATTATTGTAAGAAGCGATATGCACATGCAGGTTCTCCCAATCCTTCTTTGT
JMFF034A18+                                                                    TGT
                      ____________________________________________________________
consensus             AGTAGGGAAATTATTGTAAGAAGCGATATGCACATGCAGGTTCTCCCAATCCTTCTTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048J08+           TATCTTGATACCCTTCTTCTCATCCTCAACATCACAAGCACGGGCTCGAATTTCTTTTAG
JMSF026F24+           TATCTTGATACCCTTCTTCTCATCCTCAACATCACAAGCACGGGCTCGAATTTCTTTTAG
JMSF013F18+           TATCTTGATACCCTTCTTCTCATCCTCAACATCACAAGCACGGGCTCGAATTTCTTTTAG
JMFF037M24+           TATCTTGATACCCTTCTTCTCATCCTCAACATCACAAGCACGGGCTCGAATTTCTTTTAG
JMFF034A18+           TATCTTGATACCCTTCTTCTCATCCTCAACATCACAAGCACGGGCTCGAATTTCTTTTAG
                      ____________________________________________________________
consensus             TATCTTGATACCCTTCTTCTCATCCTCAACATCACAAGCACGGGCTCGAATTTCTTTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048J08+           ACAATTTTGGTATCTCACCCCAGAAAGTGACATTTCCTTCCCGT                
JMSF026F24+           ACAATTTTGGTATCTCACCCCAGAAAGTGACATTTCCTTCCCGTTGAGCCACATGCGATC
JMSF013F18+           ACAATTTTGGTATCTCACCCCAGAAAGTGACATTTCCTTCCCGTTGAGCCACATGCGATC
JMFF037M24+           ACAATTTTGGTATCTCACCCCAGAAAGTGACATTTCCTTCCCGTTGAGCCACATGCGATC
JMSF014D03+                        CTCACCCCAGAAAGTGACATTTCCTTCCCGTTGAGCCACATGCGATC
JMFF034A18+           ACAATTTTGGTATCTCACCCCAGAAAGTGACATTTCCTTCCCGTTGAGCCACATGCGATC
                      ____________________________________________________________
consensus             ACAATTTTGGTATCTCACCCCAGAAAGTGACATTTCCTTCCCGTTGAGCCACATGCGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F24+           TTGGTCGAAAGCGGGGCTGACGGCGACGGTGGTGGTGGTGCAGAGGTGGGCAGGGTCAAG
JMSF013F18+           TTGGTCGAAAGCGGGGCTGACGGCGACGGTGGTGGTGGTGCAGAGGTGGGCAGGGTCAAG
JMFF037M24+           TTGGTCGAAAGCGGGGCTGACGGCGACGGTGGTGGTGGTGCAGAGGTGGGCAGGGTCAAG
JMSF014D03+           TTGGTCGAAAGCGGGGCTGACGGCGACGGTGGTGGTGGTGCAGAGGTGGGCAGGGTCAAG
JMFF034A18+           TTGGTCGAAAGCGGGGCTGACGGCGACGGTGGTGGTGGTGCAGAGGTGGGCAGGGTCAAG
                      ____________________________________________________________
consensus             TTGGTCGAAAGCGGGGCTGACGGCGACGGTGGTGGTGGTGCAGAGGTGGGCAGGGTCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F24+           GGTGACGCTGATGCTGTCATTGATGGGGAGGATGAGGGTCTCGTCCCTCTTCCCCCAGTA
JMSF013F18+           GGTGACGCTGATGCTGTCATTGATGGGGAGGATGAGGGTCTCGTCCCTCTTCCCCCAGTA
JMFF037M24+           GGTGACGCTGATGCTGTCATTGATGGGGAGGATGAGGGTCTCGTCCCTCTTCCCCCAGTA
JMSF014D03+           GGTGACGCTGATGCTGTCATTGATGGGGAGGATGAGGGTCTCGTCCCTCTTCCCCCAGTA
JMFF034A18+           GGTGACGCTGATGCTGTCATTGATGGGGAGGATGAGGGTCTCGTCCCTCTTCCCCCAGTA
                      ____________________________________________________________
consensus             GGTGACGCTGATGCTGTCATTGATGGGGAGGATGAGGGTCTCGTCCCTCTTCCCCCAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F24+           CTTTATCACCGCTATGTTCGTCGGCGTCTGCGCCGTCACCATTAGCACCCATTTCTCCGC
JMSF013F18+           CTTTATCACCGCTATGTTCGTCGGCGTCTGCGCCGTCACCATTAGCACCCATTTCTCCGC
JMFF037M24+           CTTTATCACCGCTATGTTCGTCGGCGTCTGCGCCGTCACCATTAGCACCCATTTCTCCGC
JMSF014D03+           CTTTATCACCGCTATGTTCGTCGGCGTCTGCGCCGTCACCATTAGCACCCATTTCTCCGC
JMFF034A18+           CTTTATCACCGCTATGTTCGTCGGCGTCTGCGCCGTCACCATTAGCACCCATTTCTCCGC
                      ____________________________________________________________
consensus             CTTTATCACCGCTATGTTCGTCGGCGTCTGCGCCGTCACCATTAGCACCCATTTCTCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F24+           CATGGTCCCCGGAAAAGGAAAAGAAAAGAAAAGCAGGCGTTGTTGACTGCAAAGACTATT
JMSF013F18+           CATGGTCCCCGGAAAAGGAAAAGAAAAGAAAAGCAGGCGTTGTTGACTGCAAAGACTATT
JMFF037M24+           CATGGTCCCCGGAAAAGGAAAAGAAAAGAAAAGCAGGCGTTGTTGACTGCAAAGACTATT
JMSF014D03+           CATGGTCCCCGGAAAAGGAAAAGAAAAGAAAAGCAGGCGTTGTTGACTGCAAAGACTATT
JMFF034A18+           CATGGTCCCCGGAAAAGGAAAAGAAAAGAAAAGCAGGCGTTGTTGACTGCAAAGACTATT
                      ____________________________________________________________
consensus             CATGGTCCCCGGAAAAGGAAAAGAAAAGAAAAGCAGGCGTTGTTGACTGCAAAGACTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F24+           GATGGAAACAGGGAGCGAGCGTG                                     
JMSF013F18+           GATGGAAACAGGGAGCGAGCGTGAGTGT                                
JMFF037M24+           GATGGAAACAGGGAGCGAGCGTGAGTGTACAAGTGAGATCAGATCTTTACAGTTATATAA
JMSF014D03+           GATGGAAACAGGGAGCGAGCGTGAGTGT                                
JMFF034A18+           GATGGAAACAGGGAGCGAGCGTGAGTGTACAAGTGAGATCAGATCTTTACAGTTATATAA
                      ____________________________________________________________
consensus             GATGGAAACAGGGAGCGAGCGTGAGTGTACAAGTGAGATCAGATCTTTACAGTTATATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M24+           GCATTTTTTGCGTGCGTCTGCTGAATGTAAC                             
JMFF034A18+           GCATTTTTTGCGTGCGTCTGCTGAATGTAACAACTATGCGATGGCGGCTAGTATTATTAT
                      ____________________________________________________________
consensus             GCATTTTTTGCGTGCGTCTGCTGAATGTAACAACTATGCGATGGCGGCTAGTATTATTAT