Contig 000189:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033G22Sequence555000189 (3)ref|XP_009626627.1|6e-50PREDICTED: 60S ribosomal protein L7a-1 [Nicotiana tomentosiformis] ref|XP_009773770002512 (16)ref|XP_009626627.1|1e-121PREDICTED: 60S ribosomal protein L7a-1 [Nicotiana tomentosiformis] ref|XP_009773
JMFF033I01Sequence349000189 (3)ref|XP_002525923.1|6e-1460S ribosomal protein L7a, putative [Ricinus communis] gb|EEF36443.1| 60S riboso618002512 (16)ref|XP_009593018.1|5e-111PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793
JMSF010L11Sequence349000189 (3)ref|XP_004304533.1|3e-44PREDICTED: 60S ribosomal protein L7a-2 [Fragaria vesca subsp. vesca]771002512 (16)ref|XP_009593018.1|6e-76PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793

Alignment

This contig is upended


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JMFF033G22+                                                        GCTCAATGAGGTAAG
                      ____________________________________________________________
consensus                                                          GCTCAATGAGGTAAG
 
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JMFF033G22+           TGACATGCTTGAGCCCATACTTAACAACAATAGGCTTCTTTAGTTCAGGAGTCTTTCCCT
                      ____________________________________________________________
consensus             TGACATGCTTGAGCCCATACTTAACAACAATAGGCTTCTTTAGTTCAGGAGTCTTTCCCT
 
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JMSF010L11+                                                       GCCTTGTCCTCAGGCC
JMFF033G22+           CACTTTCAGCCTGGGCCCTTTTCAAAAGGCGCTCCTTCTTAGCAGCCTTATCCTCAGGCC
                      ____________________________________________________________
consensus             CACTTTCAGCCTGGGCCCTTTTCAAAAGGCGCTCCTTCTTAGCAGCCTTGTCCTCAGGCC
 
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JMSF010L11+           TATACTTCAGGAGCATCTTAAAGAGATTTGTGGCAAGGTTCTTATCAAGGGTTTTGGAGA
JMFF033G22+           TGTACTTGAGAAGCATCTTGAAGAGATTCGTTGCTAAGTTCTTATCAAGGGTCTTGGAAA
                      ____________________________________________________________
consensus             TGTACTTGAGGAGCATCTTGAAGAGATTTGTTGCTAGGTTCTTATCAAGGGTTTTGGAGA
 
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JMFF033I01+                  GAGTGCTGGCGGGACCTTCAAGCGCTGCTTGAGGATCCTCCTCTTCCTCNGGA
JMSF010L11+           ACTGATTGAGGGCAGGTGGAACCTTCAAGCGCTGCTTGAGGATCCGTCTCTTCCTCTGGA
JMFF033G22+           ACTGGTTGAGTGCTGGCGGGACCTTCAAGCGCTGCTTGAGGATCCTCCTCTTCCTCTGGA
                      ____________________________________________________________
consensus             ACTGGTTGAGTGCTGGCGGGACCTTCAAGCGCTGCTTGAGGATCCTCCTCTTCCTCTGGA
 
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JMFF033I01+           TGCGAACAACTTGCGGCCATTTGACGAACCTTGTAAGATCNTTNTTGGGCGGCAATGCAC
JMSF010L11+           TACGCACAACCTGAGGCCATTTGACGAACCTGGTCAGATCCCTCTTGGGTGGCAATGCCC
JMFF033G22+           TGCGAACAACTTGCGGCCATTTGACGAACCTTGTAAGATCCTTCTTGGGCGGCAATGCAC
                      ____________________________________________________________
consensus             TGCGAACAACTTGCGGCCATTTGACGAACCTTGTAAGATCCTTCTTGGGCGGCAATGCAC
 
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JMFF033I01+           CTCCGATTCCAAATTGCTTTGGCCGCTTCTCAAAAAGCGGGTTCACCACCTTCTCCGGCT
JMSF010L11+           CGCCGATGCCGAATTGCTTCGGCCGCTTCTCGAACAACGGGTTCACGACCTTCTCCGGCT
JMFF033G22+           CTCCGATTCCAAATTGCTTTGGCCGCTTCTCAAAAAGCGGGTTCACCACCTTCTCCGGCT
                      ____________________________________________________________
consensus             CTCCGATTCCAAATTGCTTTGGCCGCTTCTCAAAAAGCGGGTTCACCACCTTCTCCGGCT
 
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JMFF033I01+           TCTTCTTTGCCGCCCTTCTTCGCCTTCATCATATCGTCGCGCTCCCATTCCTCGGAACCC
JMSF010L11+           TCTTCTT                                                     
JMFF033G22+           TCTTCTTTGCCGCCCTTCTTCGCCTTCATCATATCGTCGCGCTCCCATTCCTCGGAACCC
                      ____________________________________________________________
consensus             TCTTCTTTGCCGCCCTTCTTCGCCTTCATCATATCGTCGCGCTCCCATTCCTCGGAACCC
 
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JMFF033I01+           GGCCTCCTTTTGTTTGAAACGTTGACGTTTTGATGGATGGTCTCCGCCATTGTTGCACAG
JMFF033G22+           GGCCTCCTTTTGTTTGAAACGTTGACGTTTTGATGGATGGTCTCCGCCATTGTTGCACAG
                      ____________________________________________________________
consensus             GGCCTCCTTTTGTTTGAAACGTTGACGTTTTGATGGATGGTCTCCGCCATTGTTGCACAG
 
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JMFF033I01+           AAATCGCAAGAAATTAGAGAGATCAGTTTTGTCGGAGAAGATAATGATGAGA        
JMFF033G22+           AAATCGCAAGAAATTAGAGAGATCAGTTTTGTCGGAGAAGATAATGATGAGATTGACAGC
                      ____________________________________________________________
consensus             AAATCGCAAGAAATTAGAGAGATCAGTTTTGTCGGAGAAGATAATGATGAGATTGACAGC