Contig 000188:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033F20Sequence576000188 (3)emb|CDP09591.1|1e-29unnamed protein product [Coffea canephora]779012359 (3)emb|CDP04202.1|1e-68unnamed protein product [Coffea canephora]
JMFS103C09Sequence545000188 (3)emb|CDP09591.1|5e-39unnamed protein product [Coffea canephora]
JMSF051N17Sequence640000188 (3)emb|CDP09591.1|1e-49unnamed protein product [Coffea canephora]739012359 (3)emb|CDP19014.1|7e-94unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF051N17+                                  CCATGTTCCACAAATGATCTGTACCCATCGTCGTTGA
                      ____________________________________________________________
consensus                                    CCATGTTCCACAAATGATCTGTACCCATCGTCGTTGA
 
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JMFS103C09+                                       AACCGGCGAGGCAAACGTGGAAACCACCGAGT
JMSF051N17+           ACGCGAACGTGGGCATAACTCTAGCAGGAACCGGCGAGGCAAACGTGGAAACCACCGAGT
                      ____________________________________________________________
consensus             ACGCGAACGTGGGCATAACTCTAGCAGGAACCGGCGAGGCAAACGTGGAAACCACCGAGT
 
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JMFS103C09+           CCGTGTCCGACAACGTATATTCTCTTCCACCAAGGCTCTCCCGGATCACGAGGTAATGAT
JMSF051N17+           CCGTGTCCGACAACGTATATTCTCTTCCACCAAGGCTCTCCCGGATCACGAGGTAATGAT
JMFF033F20+                                         CAAGGCTCTCCCGGATCGGCAAGTAAAGAT
                      ____________________________________________________________
consensus             CCGTGTCCGACAACGTATATTCTCTTCCACCAAGGCTCTCCCGGATCACGAGGTAATGAT
 
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JMFS103C09+           TTACCCCGAGAAACCCGGCGCCGGATGTGTAAAACAGGTAAGAAGGAACACCGAGGT-CA
JMSF051N17+           TTACCCCGAGAAACCCGGCGCCGGATGTGTAAAACAGGTAAGAAGGAACACCGAGGT-CA
JMFF033F20+           TTAATCCGAGAAAGCCAGCGCCGGAGGTGTAAAACAGGTAAGAAGGAACACCGAGGTCCA
                      ____________________________________________________________
consensus             TTACCCCGAGAAACCCGGCGCCGGATGTGTAAAACAGGTAAGAAGGAACACCGAGGT-CA
 
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JMFS103C09+           TTCGCCACGTCAACCATAGAACTGCAGAAAAAATCAAATACTATCCCGGCGAGCGGCGGG
JMSF051N17+           TTCGCCACGTCAACCATAGAACTGCAGAAAAAATCAAATACTATCCCGGCGAGCGGCGGG
JMFF033F20+           TTCGCCACGTCAACCATGGAACTGCAGAACAAATCAAATACTATCCCGGCAAGCGGCGGG
                      ____________________________________________________________
consensus             TTCGCCACGTCAACCATAGAACTGCAGAAAAAATCAAATACTATCCCGGCGAGCGGCGGG
 
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JMFS103C09+           GATTCGCCGGAATCCGACGAGAGCACGTTATTGACGATCGCGTGTTTGGCTTGTGACCTA
JMSF051N17+           GATTCGCCGGAATCCGACGAGAGCACGTTATTGACGATCGCGTGTTTGGCTTGTGACCTA
JMFF033F20+           GACTCGCCGGAATCCGACGAGAGCACGCTATTGACGATCGCGTGCTTGGCATGGGACCTA
                      ____________________________________________________________
consensus             GATTCGCCGGAATCCGACGAGAGCACGTTATTGACGATCGCGTGTTTGGCTTGTGACCTA
 
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JMFS103C09+           TGGCTTTTTATATAGGCGGAAAGGTAAATCTCTGGGACCTTGAGAATCATTTCTTCCGGC
JMSF051N17+           TGGCTTTTTATATAGGCGGAAAGGTAAATCTCTGGGACCTTGAGAATCATTTCTTCCGGC
JMFF033F20+           TAGCTCTTTATATAAGTGGCCATGTAATTCTCAGGGCACTTGACAGCCATTTCTTCCGGC
                      ____________________________________________________________
consensus             TGGCTTTTTATATAGGCGGAAAGGTAAATCTCTGGGACCTTGAGAATCATTTCTTCCGGC
 
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JMFS103C09+           GGTGGCTCCATCTCCGGAAGGTTCAAGTGGCGGATTCTGGCATCGGCGGAGACAACATTT
JMSF051N17+           GGTGGCTCCATCTCCGGAAGGTTCAAGTGGCGGATTCTGGCATCGGCGGAGACAACATTT
JMFF033F20+           GGTGGCTCGATCTCCGGAAGGTTCAAGTGGCGGATTCTGGCATCGGCGGAGACAACTTGT
                      ____________________________________________________________
consensus             GGTGGCTCCATCTCCGGAAGGTTCAAGTGGCGGATTCTGGCATCGGCGGAGACAACATTT
 
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JMFS103C09+           TGGACGACGGTGTTGGCAATAGGGTCCGCCGGTTGCTTTATAACTAGCACTGTAATGGAT
JMSF051N17+           TGGACGACGGTGTTGGCAATAGGGTCCGCCGGTTGCTTTATAACTAGCACTGTAATGGAT
JMFF033F20+           TGGACGACGGTGTTAGCGATAGGGTCCGCCGGGTGCTTTATAACTAGCACTGTAATGGAT
                      ____________________________________________________________
consensus             TGGACGACGGTGTTGGCAATAGGGTCCGCCGGTTGCTTTATAACTAGCACTGTAATGGAT
 
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JMFS103C09+           AGGCGGTCGTCTCGGTCGAGAAGGAGCTTGGCAAGCTCAACAATGGAGACAATATGACCT
JMSF051N17+           AGGCGGTCGTCTCGGTCGAGAAGGAGCTTGGCAAGCTCAACAATGGAGACAATATGACCT
JMFF033F20+           AGGCGGTCGTCTCGATGGAGTAGAAGCTTGGCGAGCTCAACAATGGAAACAATATGACCT
                      ____________________________________________________________
consensus             AGGCGGTCGTCTCGGTCGAGAAGGAGCTTGGCAAGCTCAACAATGGAGACAATATGACCT
 
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JMFS103C09+           ACCATCGGTGCAGGGATGAAGACAAGCTCA                              
JMSF051N17+           ACCATCGGTGCAGGGATGAAGACAAGCTCAACTTTCTTCATGTTTGGAG           
JMFF033F20+           ACCAGCGGTGAAGGGACGAAGACAAGCTCAGCTTTCTTCATGTCTGGAGAGTTCAGGGAC
                      ____________________________________________________________
consensus             ACCATCGGTGCAGGGATGAAGACAAGCTCAGCTTTCTTCATGTTTGGAGAGTTCAGGGAC
 
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JMFF033F20+           CGAGAAGATAAGAGTTTAGAAGTTTTTGTATGTGGATATTCTTTGTTGCTTATTTAAGCT
                      ____________________________________________________________
consensus             CGAGAAGATAAGAGTTTAGAAGTTTTTGTATGTGGATATTCTTTGTTGCTTATTTAAGCT