Contig 000186:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF042L23+                                            CGTAAACCAGTGACCCCAACCCAAGTG
                      ____________________________________________________________
consensus                                              CGTAAACCAGTGACCCCAACCCAAGTG
 
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JMSF042L23+           AGAAACCTCGGGCAGGCCGGTTAGAGGAGATGGAGCAGCTATCGGATGCGAGGAGTATTT
                      ____________________________________________________________
consensus             AGAAACCTCGGGCAGGCCGGTTAGAGGAGATGGAGCAGCTATCGGATGCGAGGAGTATTT
 
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JMSF042L23+           GTGATGAACCGCAAATTTGGCTGAATTCCTTTCTTCTCGTGAATGTGACCCGTGATACTC
                      ____________________________________________________________
consensus             GTGATGAACCGCAAATTTGGCTGAATTCCTTTCTTCTCGTGAATGTGACCCGTGATACTC
 
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JMSF042L23+           CTTGTCAACAAGATGAAACGAATCCGATTGACCGTTATTATCGCCATTCTTTGTTTTCCA
                      ____________________________________________________________
consensus             CTTGTCAACAAGATGAAACGAATCCGATTGACCGTTATTATCGCCATTCTTTGTTTTCCA
 
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JMSF042L23+           TTCCCCATCAGATTCTTTCTCAGTGGATTTATCTTGAACAGTAGGGAAATTCCCATCTTC
rJMSF007D01+           TCCCCATCAGATTCTTTCTCAGTGGATTTATC-TGAACAGTAGGGAAATTCCCATCTTC
                      ____________________________________________________________
consensus             TTCCCCATCAGATTCTTTCTCAGTGGATTTATCTTGAACAGTAGGGAAATTCCCATCTTC
 
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JMSF042L23+           ATTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTG
rJMSF007D01+          ATTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTG
                      ____________________________________________________________
consensus             ATTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTG
 
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JMSF042L23+           ACAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGT
JMFF019N21+                                  CCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGT
rJMSF007D01+          ACAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGT
                      ____________________________________________________________
consensus             ACAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGT
 
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JMSF042L23+           TACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACAC
JMFF019N21+           TACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACAC
rJMSF007D01+          TACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACAC
                      ____________________________________________________________
consensus             TACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACAC
 
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JMSF042L23+           CTTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAGCCCATCTT
JMFF019N21+           CTTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTT
rJMSF007D01+          CTTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTT
                      ____________________________________________________________
consensus             CTTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTT
 
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JMSF042L23+           CTTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTC
JMFF019N21+           CTTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTC
rJMSF007D01+          CTTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTC
JMFF033B16+             TGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTC
                      ____________________________________________________________
consensus             CTTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTC
 
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JMSF042L23+           TGAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAG
JMFF019N21+           TGAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAG
rJMSF007D01+          TGAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAG
JMFF033B16+           TGAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAG
                      ____________________________________________________________
consensus             TGAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAG
 
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JMSF042L23+           ATCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATA
JMFF019N21+           ATCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATA
rJMSF007D01+          ATCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATA
JMFF033B16+           ATCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATA
                      ____________________________________________________________
consensus             ATCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATA
 
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JMSF042L23+           ATCTTGCCTCACAGGAACACCAA                                     
JMFF019N21+           ATCTTGCCTCACAGGAACACCAACTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
rJMSF007D01+          ATCTTGCCTCACAGGAACACCAACTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
JMFF033B16+           ATCTTGCCTCACAGGAACACCAACTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
                      ____________________________________________________________
consensus             ATCTTGCCTCACAGGAACACCAACTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
 
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JMFF019N21+           GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
rJMSF007D01+          GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
JMFF033B16+           GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
                      ____________________________________________________________
consensus             GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
 
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JMFF019N21+           TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
rJMSF007D01+          TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
JMFF033B16+           TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
                      ____________________________________________________________
consensus             TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
 
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JMFF019N21+           CTGTTCTTGCAGGGAGGAGTAAAGAT                                  
rJMSF007D01+          CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
JMFF033B16+           CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
                      ____________________________________________________________
consensus             CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
 
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rJMSF007D01+          GCTTAGAAATGTTTCGAGAAATGC                                    
JMFF033B16+           GCTTAGAAATGTTTCGAGAAATGCTACTAGAAGGTAAGGAAGGGTGGAGTTATCAGTGGT
                      ____________________________________________________________
consensus             GCTTAGAAATGTTTCGAGAAATGCTACTAGAAGGTAAGGAAGGGTGGAGTTATCAGTGGT